diff --git a/misc-scripts/xref_mapping/XrefParser/RGDParser.pm b/misc-scripts/xref_mapping/XrefParser/RGDParser.pm index 5487b73b030caca1eea8964334ce3cdba456e864..5349b97cd932a6b1222ee0882d8e295954d2d0ef 100644 --- a/misc-scripts/xref_mapping/XrefParser/RGDParser.pm +++ b/misc-scripts/xref_mapping/XrefParser/RGDParser.pm @@ -44,7 +44,7 @@ sub run { } - my (%genbank) = %{XrefParser::BaseParser->get_valid_codes("EMBL",$species_id)}; +# my (%genbank) = %{XrefParser::BaseParser->get_valid_codes("EMBL",$species_id)}; my (%refseq) = %{XrefParser::BaseParser->get_valid_codes("refseq",$species_id)}; open(RGD,"<".$file) || die "Could not open $file\n"; @@ -60,7 +60,7 @@ sub run { my @array = split (/\t/,$_); my $xref=undef; $xref=$refseq{$array[0]} if defined($refseq{$array[0]}); - $xref=$genbank{$array[0]} if defined($genbank{$array[0]}); +# $xref=$genbank{$array[0]} if defined($genbank{$array[0]}); if(defined($xref)){ XrefParser::BaseParser->add_to_xrefs($xref,"RGD:".$array[2],"",$array[1],"","",$source_id,$species_id); $count++;