From dca80434a7495b038eaaea17a5602aed7b7d8afb Mon Sep 17 00:00:00 2001 From: Steve Trevanion <st3@sanger.ac.uk> Date: Mon, 3 Aug 2009 15:07:20 +0000 Subject: [PATCH] new vega genetypes --- misc-scripts/attribute_types/attrib_type.txt | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/misc-scripts/attribute_types/attrib_type.txt b/misc-scripts/attribute_types/attrib_type.txt index 9f7c966632..95782545d6 100644 --- a/misc-scripts/attribute_types/attrib_type.txt +++ b/misc-scripts/attribute_types/attrib_type.txt @@ -139,7 +139,7 @@ 59 Frameshift Frameshift Frameshift modelled as intron #more gene counts for Vega -60 PTCount processed_transcript_UNKNOWN Number of Processed Transcripts +60 PTCount processed_transcript Number of Processed Transcripts 61 PredPTCount processed_transcript_PREDICTED Number of Predicted Processed Transcripts @@ -303,7 +303,11 @@ 179 TotTECGeneCount TEC_all Total number of TEC genes 180 TUyPsCount transcribed_unitary_pseudogene Number of Transcribed Unitary Pseudogenes 181 PolyCount polymorphic Number of Polymorphic Genes -182 KnwnPolyCount polymorphic Number of Known Polymorphic Genes +182 KnwnPolyCount polymorphic Number of Known Polymorphic Genes +183 KnwnTRCount TR_gene_known Number of Known TR Genes +184 TRGeneCount TR_gene Number of TR Genes +185 TRPsCount TR_pseudo Number of TR Pseudogenes + # Attributes like ie split_tscript incons_strands incons_phases is_folded unwanted_evidence # exon_too_long contains_stops borked_coords low_complex evi_coverage are added by BlastMiniGenewise in the build process. # They can be deleted out of transcript_attrib and attrib_type table -- GitLab