diff --git a/misc-scripts/density_feature/gene_density_calc.pl b/misc-scripts/density_feature/gene_density_calc.pl index f9ac1c9cc2a60456452184a02e9c1e04d20c354a..b793532fc193e5bdbddc2b22626f36dd2a455f2a 100644 --- a/misc-scripts/density_feature/gene_density_calc.pl +++ b/misc-scripts/density_feature/gene_density_calc.pl @@ -7,8 +7,9 @@ # It will only run on databases with genes ... # -# I think the right thing here is too generate densities on the biggest 50-100 toplevel slices ... -# The website will be happy with about 150 bins I think. +# I think the right thing here is too generate densities on the longest +# 125 toplevel slices... The website will be happy with about 150 bins I +# think. use strict; @@ -18,8 +19,8 @@ use Bio::EnsEMBL::DensityType; use Bio::EnsEMBL::DensityFeature; use Getopt::Long; -my $bin_count = 150; -my $long_slice_count = 100; +my $bin_count = 150; +my $long_slice_count = 125; my ( $host, $user, $pass, $port, $dbname ); diff --git a/misc-scripts/density_feature/percent_gc_calc.pl b/misc-scripts/density_feature/percent_gc_calc.pl index 4b1930d848f6b0e555c288bc04e3064ab28c92a5..ae3e59910956cecf0801f3e79d3828e067858151 100644 --- a/misc-scripts/density_feature/percent_gc_calc.pl +++ b/misc-scripts/density_feature/percent_gc_calc.pl @@ -36,9 +36,8 @@ my $db = new Bio::EnsEMBL::DBSQL::DBAdaptor(-host => $host, -dbname => $dbname); -my $bin_count = 150; -my $long_slice_count = 100; - +my $bin_count = 150; +my $long_slice_count = 125; # # Check wether the script should run on given database diff --git a/misc-scripts/density_feature/variation_density.pl b/misc-scripts/density_feature/variation_density.pl index 6e80a3e7445c228200b06a492c5f078d94db45eb..6f89147ec98d134e7dc00a11627c77d003db6021 100644 --- a/misc-scripts/density_feature/variation_density.pl +++ b/misc-scripts/density_feature/variation_density.pl @@ -1,6 +1,7 @@ # # calculates the variation density from given core database -# It finds Variation database by itself using naming convention s/core/variation/ +# It finds Variation database by itself using naming convention +# s/core/variation/ # # @@ -17,8 +18,8 @@ use Getopt::Long; use Data::Dumper; $Data::Dumper::Maxdepth = 2; -my $bin_count = 150; -my $long_slice_count = 100; +my $bin_count = 150; +my $long_slice_count = 125; my ( $host, $user, $pass, $port, $dbname );