diff --git a/misc-scripts/xref_mapping/xref_config.ini b/misc-scripts/xref_mapping/xref_config.ini index a64d7ee296bdecc18f203ce786f96fcc62f70d68..485aa8b64b88012d2d5cc6ad666cafe714c0cd2b 100644 --- a/misc-scripts/xref_mapping/xref_config.ini +++ b/misc-scripts/xref_mapping/xref_config.ini @@ -3,8 +3,15 @@ ######################################################################## # SOURCES # # # -# Keys: name, download, order, priority, prio_descr, parser, # -# release_uri, data_uri (multiple) # +# Keys: # +# name - name of this source (required) # +# download - must be downloaded (Y or N, required) # +# order - (required) # +# priority - (required) # +# prio_descr - (optional) # +# parser - the parser to be used (required) # +# release_uri - URI pointing to release information (optional) # +# data_uri - URI porinting to the data files (multiple, required) # # # ######################################################################## @@ -1476,7 +1483,12 @@ data_uri = mysql://ensembldb.ensembl.org::caenorhabditis_elegans_core_39_ ######################################################################## # SPECIES # # # -# Keys: taxonomy_id, aliases, source (multiple) # +# Keys: # +# taxonomy_id - taxonomy ID of species/strain (required) # +# strain_of - species of which this is a strain (optional) # +# aliases - comma-separated list of aliases (optional) # +# source - sources use for this species/strain # +# (multiple, required) # # # ######################################################################## @@ -1518,6 +1530,7 @@ source = Uniprot/Varsplic::MULTI [species anopheles_gambiae_strain] taxonomy_id = 180454 +strain_of = anopheles_gambiae aliases = agambiae_strain, anopheles_strain, anophelesgambiae_strain, mosquito_strain source = ARRAY_EMBL_MMC1_20k_v1::anopheles_gambiae source = ARRAY_EMBL_MMC2_12k_v1::anopheles_gambiae @@ -1531,6 +1544,8 @@ source = Celera_Trans::anopheles_gambiae source = EntrezGene::MULTI source = GO::MULTI source = Interpro::MULTI +source = RefSeq_dna::MULTI-invertebrate +source = RefSeq_peptide::MULTI-invertebrate source = UniGene::anopheles_gambiae source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI @@ -1569,6 +1584,7 @@ aliases = caenorhabditiselegans, celegans, elegans source = EntrezGene::MULTI source = GO::caenorhabditis_elegans source = Interpro::MULTI +source = RefSeq_dna::MULTI-invertebrate source = RefSeq_peptide::MULTI-invertebrate source = UniGene::caenorhabditis_elegans source = Uniprot/SPTREMBL::MULTI