From e27292357a2b42d31116cc8e43eca6dc5018e88c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Andreas=20Kusalananda=20K=C3=A4h=C3=A4ri?=
<ak4@sanger.ac.uk>
Date: Tue, 31 Aug 2010 12:32:58 +0000
Subject: [PATCH] Fix syntax error noticed by Dan S.
---
modules/Bio/EnsEMBL/DBSQL/AssemblyMapperAdaptor.pm | 12 +++++-------
1 file changed, 5 insertions(+), 7 deletions(-)
diff --git a/modules/Bio/EnsEMBL/DBSQL/AssemblyMapperAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/AssemblyMapperAdaptor.pm
index 617c7f3e79..f229ca1117 100644
--- a/modules/Bio/EnsEMBL/DBSQL/AssemblyMapperAdaptor.pm
+++ b/modules/Bio/EnsEMBL/DBSQL/AssemblyMapperAdaptor.pm
@@ -1161,7 +1161,6 @@ sub _register_chained_special {
# Check for the simple case where the ChainedMapper is short
if ( !defined $mid_cs ) {
- $mid_cs_id = $last_cs->dbID();
$start_mid_mapper = $combined_mapper;
} else {
$mid_cs_id = $mid_cs->dbID();
@@ -1509,15 +1508,14 @@ sub register_all_chained {
}
my ( $mid_cs_id, $start_cs_id, $reg, $mapper );
- if( ! defined $mid_cs ) {
-
- $mid_cs_id = $last_cs->dbID();
+ if ( !defined $mid_cs ) {
+ $mid_cs_id = $last_cs->dbID();
$start_cs_id = $first_cs->dbID();
- $mapper = $combined_mapper;
+ $mapper = $combined_mapper;
} else {
- $mid_cs_id = $mid_cs->dbID();
+ $mid_cs_id = $mid_cs->dbID();
$start_cs_id = $first_cs->dbID();
- $mapper = $start_mid_mapper;
+ $mapper = $start_mid_mapper;
}
$reg = $casm_mapper->first_registry();
--
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