diff --git a/misc-scripts/repeats/vega_repeat_libraries.pl b/misc-scripts/repeats/vega_repeat_libraries.pl index 5b25707b2417ea87226b3bede02fd57f6da9e2e1..721d42f7619014dbd06b492bc971d1b77653a7d1 100644 --- a/misc-scripts/repeats/vega_repeat_libraries.pl +++ b/misc-scripts/repeats/vega_repeat_libraries.pl @@ -81,7 +81,7 @@ my $support = new Bio::EnsEMBL::Utils::ConversionSupport($SERVERROOT); # parse options $support->parse_common_options(@_); -$support->parse_extra_options('repeatfile', 'prune'); +$support->parse_extra_options('repeatfile=s', 'prune'); $support->allowed_params($support->get_common_params, 'repeatfile', 'prune'); if ($support->param('help') or $support->error) {