Commit e7fec65c authored by Alistair Rust's avatar Alistair Rust
Browse files

relevant_xref_id -> display_xref_id

Dropped the priority column from external_db table.
parent 551995be
...@@ -319,10 +319,10 @@ CREATE TABLE gene ( ...@@ -319,10 +319,10 @@ CREATE TABLE gene (
type VARCHAR(40) NOT NULL, type VARCHAR(40) NOT NULL,
analysis_id int, analysis_id int,
transcript_count int NOT NULL, transcript_count int NOT NULL,
relevant_xref_id int unsigned NOT NULL, display_xref_id int unsigned NOT NULL,
PRIMARY KEY (gene_id), PRIMARY KEY (gene_id),
KEY xref_id_index ( relevant_xref_id ) KEY xref_id_index ( display_xref_id )
); );
...@@ -360,12 +360,12 @@ CREATE TABLE transcript ( ...@@ -360,12 +360,12 @@ CREATE TABLE transcript (
gene_id INT UNSIGNED NOT NULL, # foreign key gene:gene_id gene_id INT UNSIGNED NOT NULL, # foreign key gene:gene_id
translation_id INT UNSIGNED NOT NULL, # foreign key translation:translation_id translation_id INT UNSIGNED NOT NULL, # foreign key translation:translation_id
exon_count int NOT NULL, exon_count int NOT NULL,
relevant_xref_id int unsigned NOT NULL, display_xref_id int unsigned NOT NULL,
PRIMARY KEY (transcript_id), PRIMARY KEY (transcript_id),
KEY gene_index (gene_id), KEY gene_index (gene_id),
KEY translation_index ( translation_id ), KEY translation_index ( translation_id ),
KEY xref_id_index ( relevant_xref_id ) KEY xref_id_index ( display_xref_id )
); );
...@@ -566,7 +566,6 @@ CREATE TABLE external_db( ...@@ -566,7 +566,6 @@ CREATE TABLE external_db(
db_name ENUM ('gene_name','Celera_Pep','Celera_Trans','Celera_Gene','HumanGenscans','protein_id','SCOP','HUGO','GO','SPTREMBL','EMBL','MarkerSymbol','SWISSPROT','PDB','MIM','RefSeq','LocusLink','Interpro','Superfamily','ANOSUB') not null, db_name ENUM ('gene_name','Celera_Pep','Celera_Trans','Celera_Gene','HumanGenscans','protein_id','SCOP','HUGO','GO','SPTREMBL','EMBL','MarkerSymbol','SWISSPROT','PDB','MIM','RefSeq','LocusLink','Interpro','Superfamily','ANOSUB') not null,
release VARCHAR(40) DEFAULT '' NOT NULL, release VARCHAR(40) DEFAULT '' NOT NULL,
status ENUM ('KNOWN','XREF','PRED') not null, status ENUM ('KNOWN','XREF','PRED') not null,
priority smallint unsigned not null,
PRIMARY KEY( external_db_id ) PRIMARY KEY( external_db_id )
); );
......
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