diff --git a/sql/patch_40_41_f.sql b/sql/patch_40_41_f.sql new file mode 100644 index 0000000000000000000000000000000000000000..2633e8c6dea35688a956fca223958527b7c0ec04 --- /dev/null +++ b/sql/patch_40_41_f.sql @@ -0,0 +1,17 @@ +# patch_40_41_f +# +# title: attrib tavle indices +# +# description: +# Add extra indices to attrib tables to improve performance. + +ALTER TABLE misc_attrib ADD INDEX val_only_idx (value(40)); +ALTER TABLE seq_region_attrib ADD INDEX val_only_idx (value(40)); +ALTER TABLE gene_attrib ADD INDEX val_only_idx (value(40)); +ALTER TABLE transcript_attrib ADD INDEX val_only_idx (value(40)); +ALTER TABLE translation_attrib ADD INDEX val_only_idx (value(40)); + +# patch identifier +INSERT INTO meta (meta_key, meta_value) VALUES ('patch', 'patch_40_41_f.sql|attrib_indices'); + + diff --git a/sql/table.sql b/sql/table.sql index 16788739fd56fbf33a2d3e1c61915141cbb76d2d..cb724deeaf8843913b9d58dc0ec3102a6745c7e3 100755 --- a/sql/table.sql +++ b/sql/table.sql @@ -868,6 +868,7 @@ INSERT INTO meta (meta_key, meta_value) VALUES ('patch', 'patch_40_41_b.sql|info INSERT INTO meta (meta_key, meta_value) VALUES ('patch', 'patch_40_41_c.sql|xref_priority'); INSERT INTO meta (meta_key, meta_value) VALUES ('patch', 'patch_40_41_d.sql|ditag_primary_key_type'); INSERT INTO meta (meta_key, meta_value) VALUES ('patch', 'patch_40_41_e.sql|schema_version'); +INSERT INTO meta (meta_key, meta_value) VALUES ('patch', 'patch_40_41_f.sql|attrib_indices'); ################################################################################ # @@ -993,6 +994,7 @@ CREATE TABLE misc_attrib ( value TEXT NOT NULL DEFAULT '', KEY type_val_idx (attrib_type_id, value(40)), + KEY val_only_idx (value(40)), KEY misc_feature_idx (misc_feature_id) ) COLLATE=latin1_swedish_ci TYPE=MyISAM; @@ -1010,6 +1012,7 @@ CREATE TABLE translation_attrib ( value TEXT NOT NULL DEFAULT '', KEY type_val_idx (attrib_type_id, value(40)), + KEY val_only_idx (value(40)), KEY translation_idx (translation_id) ) COLLATE=latin1_swedish_ci TYPE=MyISAM; @@ -1026,6 +1029,7 @@ CREATE TABLE transcript_attrib ( value TEXT NOT NULL DEFAULT '', KEY type_val_idx (attrib_type_id, value(40)), + KEY val_only_idx (value(40)), KEY transcript_idx (transcript_id) ) COLLATE=latin1_swedish_ci TYPE=MyISAM; @@ -1043,6 +1047,7 @@ CREATE TABLE gene_attrib ( value TEXT NOT NULL DEFAULT '', KEY type_val_idx (attrib_type_id, value(40)), + KEY val_only_idx (value(40)), KEY gene_idx (gene_id) ) COLLATE=latin1_swedish_ci TYPE=MyISAM; @@ -1060,6 +1065,7 @@ CREATE TABLE seq_region_attrib ( value TEXT NOT NULL DEFAULT '', KEY type_val_idx (attrib_type_id, value(40)), + KEY val_only_idx (value(40)), KEY seq_region_idx (seq_region_id) ) COLLATE=latin1_swedish_ci TYPE=MyISAM;