From e961591a44312b20030e3603691eb5441a66247d Mon Sep 17 00:00:00 2001
From: Ensembl Account <ensembl@sanger.ac.uk>
Date: Thu, 9 Dec 2010 15:59:20 +0000
Subject: [PATCH] lowercase logicname
---
misc-scripts/density_feature/percent_gc_calc.pl | 4 ++--
misc-scripts/density_feature/repeat_coverage_calc.pl | 6 +++---
2 files changed, 5 insertions(+), 5 deletions(-)
diff --git a/misc-scripts/density_feature/percent_gc_calc.pl b/misc-scripts/density_feature/percent_gc_calc.pl
index 1f15a79701..e3ebcb8484 100644
--- a/misc-scripts/density_feature/percent_gc_calc.pl
+++ b/misc-scripts/density_feature/percent_gc_calc.pl
@@ -60,7 +60,7 @@ FROM density_feature df, density_type dt, analysis a, analysis_description ad
WHERE a.analysis_id=dt.analysis_id
AND ad.analysis_id = a.analysis_id
AND dt.density_type_id=df.density_type_id
-AND a.logic_name='PercentGC') );
+AND a.logic_name='percentgc') );
$sth->execute();
# $sth = $db->dbc()->prepare(
@@ -95,7 +95,7 @@ my $analysis =
-database => "ensembl",
-gff_source => "percent_gc_calc.pl",
-gff_feature => "density",
- -logic_name => "PercentGC",
+ -logic_name => "percentgc",
-description => 'Percentage of G/C bases in the sequence.',
-display_label => 'GC content',
-displayable => 1 );
diff --git a/misc-scripts/density_feature/repeat_coverage_calc.pl b/misc-scripts/density_feature/repeat_coverage_calc.pl
index 6008bcc622..f26427621d 100644
--- a/misc-scripts/density_feature/repeat_coverage_calc.pl
+++ b/misc-scripts/density_feature/repeat_coverage_calc.pl
@@ -64,14 +64,14 @@ if( ! $repeat_count ) {
#
print "Deleting old PercentageRepeat features\n";
-$sth = $db->dbc->prepare("DELETE df, dt, a, ad FROM analysis_description ad, density_feature df, density_type dt, analysis a WHERE ad.analysis_id = a.analysis_id AND a.analysis_id=dt.analysis_id AND dt.density_type_id=df.density_type_id AND a.logic_name='PercentageRepeat'");
+$sth = $db->dbc->prepare("DELETE df, dt, a, ad FROM analysis_description ad, density_feature df, density_type dt, analysis a WHERE ad.analysis_id = a.analysis_id AND a.analysis_id=dt.analysis_id AND dt.density_type_id=df.density_type_id AND a.logic_name='rercentagerepeat'");
$sth->execute();
# $sth = $db->dbc()->prepare(
# qq(
# DELETE ad
# FROM analysis_description ad
-# WHERE ad.display_label = 'PercentageRepeat') );
+# WHERE ad.display_label = 'percentagerepeat') );
# $sth->execute();
my $slice_adaptor = $db->get_SliceAdaptor();
@@ -91,7 +91,7 @@ my $analysis =
-database => "ensembl",
-gff_source => "repeat_coverage_calc.pl",
-gff_feature => "density",
- -logic_name => "PercentageRepeat",
+ -logic_name => "percentagerepeat",
-description =>
'Percentage of repetetive elements for top level seq_regions.',
-display_label => 'Repeats (percent)',
--
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