From ea4551162bde36a5a289c7a08751be93905e1b7c Mon Sep 17 00:00:00 2001 From: Julio Fernandez Banet <jb16@sanger.ac.uk> Date: Thu, 9 Oct 2008 15:20:47 +0000 Subject: [PATCH] added some new extra descriptions --- misc-scripts/analysis_description/analysis.descriptions | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/misc-scripts/analysis_description/analysis.descriptions b/misc-scripts/analysis_description/analysis.descriptions index c80fa3ff81..1c977bcde6 100644 --- a/misc-scripts/analysis_description/analysis.descriptions +++ b/misc-scripts/analysis_description/analysis.descriptions @@ -75,12 +75,12 @@ 1 Unigene Transcripts (Unigene) Positions of <a rel="external" href="http://ncbi.nlm.nih.gov/UniGene/">UniGene</a> sequences along the genome. These are determined using TBLASTN of Genscan predictions against UniGene sequences. 1 Uniprot Proteins (UniProtKB) Proteins from the <a rel="external" href="http://uniprot.org">UniProtKB</a> database, positioned on the genome through BLASTP of Genscan-predicted peptides to UniProtKB proteins. 1 Uniprot_mammal Proteins (UniProt mammal) Mammalian proteins from the <a rel="external" href="http://uniprot.org">UniProtKB</a> database, positioned on the genome through BLASTP of Genscan-predicted mammalian peptides to UniProtKB proteins. -1 Uniprot_vertebrate_mammal Proteins (UniProt mammal) Mammalian proteins from the <a rel="external" href="http://uniprot.org">UniProtKB</a> database, positioned on the genome through BLASTP of Genscan-predicted mammalian peptides to UniProtKB proteins. +1 Uniprot_vertebrate_mammal Proteins (UniProt mammal) Mammalian proteins from the <a rel="external" href="http://uniprot.org">UniProtKB</a> database, positioned on the genome through BLASTP of Genscan-predicted mammalian peptides to UniProtKB proteins. 1 Uniprot_non_mammal Proteins (UniProt non-mammal) Non-mammal proteins from the <a rel="external" href="http://uniprot.org">UniProtKB</a> database, positioned on the genome through BLASTP of Genscan-predicted (non-mammalian) peptides to UniProtKB proteins. -1 Uniprot_vertebrate_non_mammal Proteins (UniProt non-mammal) Non-mammal proteins from the <a rel="external" href="http://uniprot.org">UniProtKB</a> database, positioned on the genome through BLASTP of Genscan-predicted (non-mammalian) peptides to UniProtKB proteins. +1 Uniprot_vertebrate_non_mammal Proteins (UniProt non-mammal) Non-mammal proteins from the <a rel="external" href="http://uniprot.org">UniProtKB</a> database, positioned on the genome through BLASTP of Genscan-predicted (non-mammalian) peptides to UniProtKB proteins. 1 Uniprot_wublastx Proteins (UniProtKB) Proteins from the <a rel="external" href="http://uniprot.org">UniProtKB </a> database, positioned on the genome through BLASTP of Genscan-predicted peptides to UniProtKB proteins. -1 Uniprot_SW Proteins from the <a rel="external"href="http://uniprot.org">UniProtKB Swiss-Prot</a> database, aligned to the genome. Protein (UniProt) -1 Uniprot_TR Proteins from the <a rel="external"href="http://uniprot.org">UniProtKB TrEMBL</a> database, aligned to the genome. Protein (TrEMBL) +1 Uniprot_SW Protein (UniProt) Proteins from the <a rel="external"href="http://uniprot.org">UniProtKB Swiss-Prot</a> database, aligned to the genome. +1 Uniprot_TR Protein (TrEMBL) Proteins from the <a rel="external"href="http://uniprot.org">UniProtKB TrEMBL</a> database, aligned to the genome. 1 Vertrna Transcripts (EMBL vertebrate) Positions of vertebrate mRNAs along the genome. mRNAs are from the <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> database. Initial alignments are performed using TBLASTN of Genscan-predicted peptides against EMBL mRNAs. 1 WGA2Genes Proteins (BLASTZ) Alignment to a human Ensembl protein inferred by projecting through a BLASTZ DNA alignment to the human genome 1 WGA2GenesDirect Proteins (BLASTZ) Alignment to a human Ensembl protein inferred by projecting through a BLASTZ DNA alignment to the human genome -- GitLab