Upgrading test schemas to relase 72

modules/t/test-genome-DBs/circ/core/meta.txt

-1	\N	schema_version	71
+1	\N	schema_version	72
 2	1	assembly.default	NCBI34
 33	1	species.classification	Chordata
 32	1	species.classification	Vertebrata
@@ -32,3 +32,5 @@
 81	\N	patch	patch_69_70_e.sql|protein_feature_hit_description
 82	\N	patch	patch_70_71_a.sql|schema_version
 83	\N	patch	patch_70_71_b.sql|mapping_set_index
+84	\N	patch	patch_71_72_a.sql|schema_version
+85	\N	patch	patch_71_72_b.sql|associated_xref

modules/t/test-genome-DBs/circ/core/table.sql

@@ -63,6 +63,28 @@ CREATE TABLE `assembly_exception` (
   KEY `ex_idx` (`exc_seq_region_id`,`exc_seq_region_start`)
 ) ENGINE=MyISAM AUTO_INCREMENT=3 DEFAULT CHARSET=latin1;
 
+CREATE TABLE `associated_group` (
+  `associated_group_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
+  `description` varchar(128) DEFAULT NULL,
+  PRIMARY KEY (`associated_group_id`)
+) ENGINE=MyISAM DEFAULT CHARSET=latin1;
+
+CREATE TABLE `associated_xref` (
+  `associated_xref_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
+  `object_xref_id` int(10) unsigned NOT NULL DEFAULT '0',
+  `xref_id` int(10) unsigned NOT NULL DEFAULT '0',
+  `source_xref_id` int(10) unsigned DEFAULT NULL,
+  `condition_type` varchar(128) DEFAULT NULL,
+  `associated_group_id` int(10) unsigned DEFAULT NULL,
+  `rank` int(10) unsigned DEFAULT '0',
+  PRIMARY KEY (`associated_xref_id`),
+  UNIQUE KEY `object_associated_source_type_idx` (`object_xref_id`,`xref_id`,`source_xref_id`,`condition_type`,`associated_group_id`),
+  KEY `associated_source_idx` (`source_xref_id`),
+  KEY `associated_object_idx` (`object_xref_id`),
+  KEY `associated_idx` (`xref_id`),
+  KEY `associated_group_idx` (`associated_group_id`)
+) ENGINE=MyISAM DEFAULT CHARSET=latin1;
+
 CREATE TABLE `attrib_type` (
   `attrib_type_id` smallint(5) unsigned NOT NULL AUTO_INCREMENT,
   `code` varchar(15) CHARACTER SET latin1 COLLATE latin1_bin NOT NULL DEFAULT '',
@@ -425,7 +447,7 @@ CREATE TABLE `meta` (
   PRIMARY KEY (`meta_id`),
   UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
   KEY `species_value_idx` (`species_id`,`meta_value`)
-) ENGINE=MyISAM AUTO_INCREMENT=84 DEFAULT CHARSET=latin1;
+) ENGINE=MyISAM AUTO_INCREMENT=86 DEFAULT CHARSET=latin1;
 
 CREATE TABLE `meta_coord` (
   `table_name` varchar(40) CHARACTER SET latin1 COLLATE latin1_bin NOT NULL DEFAULT '',

modules/t/test-genome-DBs/homo_sapiens/core/meta.txt

-1	\N	schema_version	71
+1	\N	schema_version	72
 2	1	assembly.default	NCBI34
 33	1	species.classification	Chordata
 32	1	species.classification	Vertebrata
@@ -32,3 +32,5 @@
 77	\N	schema_type	core
 78	\N	patch	patch_70_71_a.sql|schema_version
 79	\N	patch	patch_70_71_b.sql|mapping_set_index
+80	\N	patch	patch_71_72_a.sql|schema_version
+81	\N	patch	patch_71_72_b.sql|associated_xref

modules/t/test-genome-DBs/homo_sapiens/core/table.sql

@@ -63,6 +63,28 @@ CREATE TABLE `assembly_exception` (
   KEY `ex_idx` (`exc_seq_region_id`,`exc_seq_region_start`)
 ) ENGINE=MyISAM AUTO_INCREMENT=3 DEFAULT CHARSET=latin1 COLLATE=latin1_bin;
 
+CREATE TABLE `associated_group` (
+  `associated_group_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
+  `description` varchar(128) DEFAULT NULL,
+  PRIMARY KEY (`associated_group_id`)
+) ENGINE=MyISAM DEFAULT CHARSET=latin1;
+
+CREATE TABLE `associated_xref` (
+  `associated_xref_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
+  `object_xref_id` int(10) unsigned NOT NULL DEFAULT '0',
+  `xref_id` int(10) unsigned NOT NULL DEFAULT '0',
+  `source_xref_id` int(10) unsigned DEFAULT NULL,
+  `condition_type` varchar(128) DEFAULT NULL,
+  `associated_group_id` int(10) unsigned DEFAULT NULL,
+  `rank` int(10) unsigned DEFAULT '0',
+  PRIMARY KEY (`associated_xref_id`),
+  UNIQUE KEY `object_associated_source_type_idx` (`object_xref_id`,`xref_id`,`source_xref_id`,`condition_type`,`associated_group_id`),
+  KEY `associated_source_idx` (`source_xref_id`),
+  KEY `associated_object_idx` (`object_xref_id`),
+  KEY `associated_idx` (`xref_id`),
+  KEY `associated_group_idx` (`associated_group_id`)
+) ENGINE=MyISAM DEFAULT CHARSET=latin1;
+
 CREATE TABLE `attrib_type` (
   `attrib_type_id` smallint(5) unsigned NOT NULL AUTO_INCREMENT,
   `code` varchar(15) COLLATE latin1_bin NOT NULL DEFAULT '',
@@ -426,7 +448,7 @@ CREATE TABLE `meta` (
   PRIMARY KEY (`meta_id`),
   UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
   KEY `species_value_idx` (`species_id`,`meta_value`)
-) ENGINE=MyISAM AUTO_INCREMENT=80 DEFAULT CHARSET=latin1;
+) ENGINE=MyISAM AUTO_INCREMENT=82 DEFAULT CHARSET=latin1;
 
 CREATE TABLE `meta_coord` (
   `table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',

modules/t/test-genome-DBs/homo_sapiens/empty/meta.txt

-1	\N	schema_version	71
+1	\N	schema_version	72
 2	1	assembly.default	NCBI34
 33	1	species.classification	Chordata
 32	1	species.classification	Vertebrata
@@ -32,3 +32,5 @@
 81	\N	patch	patch_69_70_e.sql|protein_feature_hit_description
 82	\N	patch	patch_70_71_a.sql|schema_version
 83	\N	patch	patch_70_71_b.sql|mapping_set_index
+84	\N	patch	patch_71_72_a.sql|schema_version
+85	\N	patch	patch_71_72_b.sql|associated_xref

modules/t/test-genome-DBs/homo_sapiens/empty/table.sql

@@ -63,6 +63,28 @@ CREATE TABLE `assembly_exception` (
   KEY `ex_idx` (`exc_seq_region_id`,`exc_seq_region_start`)
 ) ENGINE=MyISAM AUTO_INCREMENT=3 DEFAULT CHARSET=latin1;
 
+CREATE TABLE `associated_group` (
+  `associated_group_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
+  `description` varchar(128) DEFAULT NULL,
+  PRIMARY KEY (`associated_group_id`)
+) ENGINE=MyISAM DEFAULT CHARSET=latin1;
+
+CREATE TABLE `associated_xref` (
+  `associated_xref_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
+  `object_xref_id` int(10) unsigned NOT NULL DEFAULT '0',
+  `xref_id` int(10) unsigned NOT NULL DEFAULT '0',
+  `source_xref_id` int(10) unsigned DEFAULT NULL,
+  `condition_type` varchar(128) DEFAULT NULL,
+  `associated_group_id` int(10) unsigned DEFAULT NULL,
+  `rank` int(10) unsigned DEFAULT '0',
+  PRIMARY KEY (`associated_xref_id`),
+  UNIQUE KEY `object_associated_source_type_idx` (`object_xref_id`,`xref_id`,`source_xref_id`,`condition_type`,`associated_group_id`),
+  KEY `associated_source_idx` (`source_xref_id`),
+  KEY `associated_object_idx` (`object_xref_id`),
+  KEY `associated_idx` (`xref_id`),
+  KEY `associated_group_idx` (`associated_group_id`)
+) ENGINE=MyISAM DEFAULT CHARSET=latin1;
+
 CREATE TABLE `attrib_type` (
   `attrib_type_id` smallint(5) unsigned NOT NULL AUTO_INCREMENT,
   `code` varchar(15) CHARACTER SET latin1 COLLATE latin1_bin NOT NULL DEFAULT '',
@@ -425,7 +447,7 @@ CREATE TABLE `meta` (
   PRIMARY KEY (`meta_id`),
   UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
   KEY `species_value_idx` (`species_id`,`meta_value`)
-) ENGINE=MyISAM AUTO_INCREMENT=84 DEFAULT CHARSET=latin1;
+) ENGINE=MyISAM AUTO_INCREMENT=86 DEFAULT CHARSET=latin1;
 
 CREATE TABLE `meta_coord` (
   `table_name` varchar(40) CHARACTER SET latin1 COLLATE latin1_bin NOT NULL DEFAULT '',