diff --git a/misc-scripts/attribute_types/attrib_type.txt b/misc-scripts/attribute_types/attrib_type.txt index 95782545d6326ffdd1cb4a91d4cdd76346ab4607..7fcd6c56d52c11cbe781d9d9f619a68de22d8dd4 100644 --- a/misc-scripts/attribute_types/attrib_type.txt +++ b/misc-scripts/attribute_types/attrib_type.txt @@ -283,7 +283,7 @@ #added for procavia capensis in release 51 171 NonGapHCov NonGapHCov -# attribute that shows if a transcript has an alternative ATG upstream of the defined start coding ATG +# attribute that shows if a supporting evidence was also used to build a Vega gene model 172 otter_support otter support Evidence ID that was used as supporting feature for building a gene in Vega # Temporary attrib using during the merge of the havana and ensembl gene sets to stablish a relation between a @@ -308,6 +308,12 @@ 184 TRGeneCount TR_gene Number of TR Genes 185 TRPsCount TR_pseudo Number of TR Pseudogenes +# attribute that shows if a supporting evidence was also used to build a Vega gene model +186 tp_otter_support otter protein transcript support Evidence ID that was used as supporting feature for building a gene in Vega +187 td_otter_support otter dna transcript support Evidence ID that was used as supporting feature for building a gene in Vega +188 ep_otter_support otter protein exon support Evidence ID that was used as supporting feature for building a gene in Vega +189 td_otter_support otter dna exon support Evidence ID that was used as supporting feature for building a gene in Vega + # Attributes like ie split_tscript incons_strands incons_phases is_folded unwanted_evidence # exon_too_long contains_stops borked_coords low_complex evi_coverage are added by BlastMiniGenewise in the build process. # They can be deleted out of transcript_attrib and attrib_type table