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ensembl-gh-mirror
ensembl
Commits
ecfdc8bc
Commit
ecfdc8bc
authored
Aug 22, 2011
by
Kieron Taylor
😠
Browse files
Removed summary_as_hash methods for sake of a clean Release 64
parent
78bdc120
Changes
3
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61 deletions
+0
-61
modules/Bio/EnsEMBL/Gene.pm
modules/Bio/EnsEMBL/Gene.pm
+0
-22
modules/Bio/EnsEMBL/Transcript.pm
modules/Bio/EnsEMBL/Transcript.pm
+0
-22
modules/Bio/EnsEMBL/Translation.pm
modules/Bio/EnsEMBL/Translation.pm
+0
-17
No files found.
modules/Bio/EnsEMBL/Gene.pm
View file @
ecfdc8bc
...
...
@@ -1473,28 +1473,6 @@ sub is_reference{
return
$self
->
{'
is_ref
'};
}
=head2 summary_as_hash
Example : $gene_summary = $gene->summary_as_hash();
Description : Retrieves a textual summary of this Gene object.
Returns : hashref of descriptive strings
=cut
sub
summary_as_hash
{
my
$self
=
shift
;
my
%summary
;
$summary
{'
stable_id
'}
=
$self
->
stable_id
;
$summary
{'
description
'}
=
$self
->
description
;
$summary
{'
biotype
'}
=
$self
->
biotype
;
$summary
{'
strand
'}
=
$self
->
strand
;
return
\
%summary
;
}
###########################
# DEPRECATED METHODS FOLLOW
###########################
...
...
modules/Bio/EnsEMBL/Transcript.pm
View file @
ecfdc8bc
...
...
@@ -2650,28 +2650,6 @@ sub load {
}
## end sub load
=head2 summary_as_hash
Example : $transcript_summary = $transcript->summary_as_hash();
Description : Retrieves a textual summary of this Transcript object.
Returns : hashref of descriptive strings
=cut
sub
summary_as_hash
{
my
$self
=
shift
;
my
%summary
;
$summary
{'
stable_id
'}
=
$self
->
stable_id
;
$summary
{'
description
'}
=
$self
->
description
;
$summary
{'
biotype
'}
=
$self
->
biotype
;
$summary
{'
start
'}
=
$self
->
start
;
$summary
{'
end
'}
=
$self
->
end
;
$summary
{'
strand
'}
=
$self
->
strand
;
$summary
{'
display_id
'}
=
$self
->
display_id
;
return
\
%summary
;
}
###########################
# DEPRECATED METHODS FOLLOW
###########################
...
...
modules/Bio/EnsEMBL/Translation.pm
View file @
ecfdc8bc
...
...
@@ -1201,22 +1201,5 @@ sub get_all_DAS_Features{
return
$self
->
SUPER::
get_all_DAS_Features
(
$slice
);
}
=head2 summary_as_hash
Example : $gene_summary = $gene->summary_as_hash();
Description : Retrieves a textual summary of this Gene object.
Returns : hashref of descriptive strings
=cut
sub
summary_as_hash
{
my
$self
=
shift
;
my
%summary
;
$summary
{'
stable_id
'}
=
$self
->
stable_id
;
$summary
{'
display_id
'}
=
$self
->
display_id
;
$summary
{'
genomic_start
'}
=
$self
->
genomic_start
;
$summary
{'
genomic_end
'}
=
$self
->
genomic_end
;
return
\
%summary
;
}
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;
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