From ee34ddf3391283e7b7fb96d7df7b3c55b7754605 Mon Sep 17 00:00:00 2001
From: Arne Stabenau <stabenau@sanger.ac.uk>
Date: Wed, 8 Dec 2004 10:32:39 +0000
Subject: [PATCH] removed double coord recaculation on Transcript add
---
modules/Bio/EnsEMBL/Gene.pm | 19 +------------------
1 file changed, 1 insertion(+), 18 deletions(-)
diff --git a/modules/Bio/EnsEMBL/Gene.pm b/modules/Bio/EnsEMBL/Gene.pm
index 605b30e018..58a06b84f4 100755
--- a/modules/Bio/EnsEMBL/Gene.pm
+++ b/modules/Bio/EnsEMBL/Gene.pm
@@ -376,26 +376,9 @@ sub add_Transcript {
throw("$trans is not a Bio::EnsEMBL::Transcript!");
}
- if( defined $self->{'start'} ) {
- if( $self->{'start'} > $trans->start() ) {
- $self->start( $trans->start() );
- }
- } else {
- $self->start( $trans->start() );
- }
-
- if( defined $self->{'end'} ) {
- if( $self->{'end'} < $trans->end() ) {
- $self->end( $trans->end() );
- }
- } else {
- $self->end( $trans->end() );
- }
-
- $self->{strand} = $trans->strand();;
-
$self->{'_transcript_array'} ||= [];
push(@{$self->{'_transcript_array'}},$trans);
+
$self->recalculate_coordinates();
}
--
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