diff --git a/misc-scripts/xref_mapping/xref_config.ini b/misc-scripts/xref_mapping/xref_config.ini index e1a23aa26e29929407e9d09ff1a6e1b6597a1c5c..6a5a22a18846b46a1fddefd37ca7423dc33beda7 100644 --- a/misc-scripts/xref_mapping/xref_config.ini +++ b/misc-scripts/xref_mapping/xref_config.ini @@ -988,7 +988,7 @@ priority = 1 prio_descr = main parser = GOSlimParser release_uri = -data_uri = script:host=>mysql-eg-staging-1,port=>4160,dbname=>ensembl_ontology_59, +data_uri = script:host=>mysql-eg-staging-1,port=>4160,dbname=>ensembl_ontology_61, [source GO::homo_sapiens] # Used by homo_sapiens @@ -1038,6 +1038,17 @@ release_uri = http://www.ebi.ac.uk/GOA/rat_release.html data_uri = ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/RAT/gene_association.goa_rat.gz data_uri = http://archive.geneontology.org/latest-termdb/go_daily-termdb.obo-xml.gz +[source GO::saccharomyces_cerevisiae] +# Used by saccharomyces_cerevisiae +name = GO +download = Y +order = 85 +priority = 1 +prio_descr = main +parser = GOParser +release_uri = +data_uri = ftp://ftp.geneontology.org/pub/go/gene-associations/gene_association.sgd.gz +data_uri = http://archive.geneontology.org/latest-termdb/go_daily-termdb.obo-xml.gz [source HPA::homo_sapiens] # Used by homo_sapiens @@ -3034,6 +3045,23 @@ source = RFAM::MULTI source = TRNASCAN-SE::MULTI-asp source = RNAMMER::MULTI-asp +[species puccinia_graministritici] +taxonomy_id = 418459 +taxonomy_id = 56615 +aliases = pucciniagraministritici, pgraminis, Puccinia graminis f. sp. tritici, Puccinia graminis f. sp. tritici CRL 75-36-700-3 +source = EntrezGene::MULTI +source = GO::MULTI +source = goslim_goa::EG +source = InterproGO::MULTI +source = Interpro::MULTI +source = RefSeq_dna::MULTI-fungi +source = RefSeq_peptide::MULTI-fungi +source = Uniprot/SPTREMBL::MULTI +source = Uniprot/SWISSPROT::MULTI +source = RFAM::MULTI +source = TRNASCAN-SE::MULTI-asp +source = RNAMMER::MULTI-asp + [species bos_taurus] taxonomy_id = 9913 aliases = bostaurus, btaurus, cow