From f1bde2f19bd439361c13d23f3b39be2520818b40 Mon Sep 17 00:00:00 2001
From: Magali Ruffier <mr6@ebi.ac.uk>
Date: Tue, 11 Sep 2012 10:37:08 +0000
Subject: [PATCH] do not use uniprot_genename as display xref if the master
xref it is dependent on is of low evidence
---
.../xref_mapping/XrefMapper/DisplayXrefs.pm | 16 ++++++++++++++++
1 file changed, 16 insertions(+)
diff --git a/misc-scripts/xref_mapping/XrefMapper/DisplayXrefs.pm b/misc-scripts/xref_mapping/XrefMapper/DisplayXrefs.pm
index 75c950bad3..beb98d6863 100644
--- a/misc-scripts/xref_mapping/XrefMapper/DisplayXrefs.pm
+++ b/misc-scripts/xref_mapping/XrefMapper/DisplayXrefs.pm
@@ -97,6 +97,22 @@ SELECT object_xref_id
WHERE ox_status = 'DUMP_OUT' AND label REGEXP '^LOC[[:digit:]]+'
LOCP
+$ignore{'Uniprot_genename'} =<<IEG;
+SELECT DISTINCT ox.object_xref_id
+ FROM object_xref ox, dependent_xref dx,
+ xref xmas, xref xdep,
+ source smas, source sdep
+ WHERE ox.xref_id = dx.dependent_xref_id AND
+ dx.dependent_xref_id = xdep.xref_id AND
+ dx.master_xref_id = xmas.xref_id AND
+ xmas.source_id = smas.source_id AND
+ xdep.source_id = sdep.source_id AND
+ smas.name like "Uniprot/SPTREMBL" AND
+ smas.status = "LOWEVIDENCE" AND
+ sdep.name like "Uniprot_genename" AND
+ ox.ox_status = "DUMP_OUT"
+IEG
+
return [\@list,\%ignore];
}
--
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