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ensembl-gh-mirror
ensembl
Commits
f1d410c1
Commit
f1d410c1
authored
Apr 16, 2013
by
Magali Ruffier
Browse files
RefSeq_dna replaced with RefSeq_mRNA in ccds database
parent
c7d87edf
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misc-scripts/xref_mapping/XrefParser/RefSeq_CCDSParser.pm
misc-scripts/xref_mapping/XrefParser/RefSeq_CCDSParser.pm
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misc-scripts/xref_mapping/XrefParser/RefSeq_CCDSParser.pm
View file @
f1d410c1
...
...
@@ -163,8 +163,8 @@ CCDS
}
}
# for each object_xref for refseq_
dna
change internal_id to xref transcript_id
$sth
->
execute
("
Ref
s
eq_
dna
")
or
croak
(
$dbi2
->
errstr
()
);
# for each object_xref for refseq_
mRNA
change internal_id to xref transcript_id
$sth
->
execute
("
Ref
S
eq_
mRNA
")
or
croak
(
$dbi2
->
errstr
()
);
while
(
my
@row
=
$sth
->
fetchrow_array
()
)
{
my
$refseq
=
$row
[
0
];
my
$internal_id
=
$row
[
1
];
...
...
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