diff --git a/modules/Bio/EnsEMBL/Slice.pm b/modules/Bio/EnsEMBL/Slice.pm index a8e2881b14a5b95f01566d0687bd3e4e2d902ef5..a48606af2dedde340b0b09df3a4b33ca21b65f27 100644 --- a/modules/Bio/EnsEMBL/Slice.pm +++ b/modules/Bio/EnsEMBL/Slice.pm @@ -806,11 +806,10 @@ sub is_chromosome { |clone |contig |genescaffold - |group |reftig |supercontig |ultracontig - /x) or ( $coord_system !~ /^chromosome$/i )) { + /x) or ( $coord_system !~ /^chromosome$/i && $coord_system !~ /^group$/i ) ) { return 0; }