From f2ca00f556f43be3c9b139f8d739bfaeb55c6cf2 Mon Sep 17 00:00:00 2001
From: Magali Ruffier <mr6@ebi.ac.uk>
Date: Mon, 15 Dec 2014 14:19:00 +0000
Subject: [PATCH] ENSCORESW-1189: group is a chromosome
---
modules/Bio/EnsEMBL/Slice.pm | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/modules/Bio/EnsEMBL/Slice.pm b/modules/Bio/EnsEMBL/Slice.pm
index a8e2881b14..a48606af2d 100644
--- a/modules/Bio/EnsEMBL/Slice.pm
+++ b/modules/Bio/EnsEMBL/Slice.pm
@@ -806,11 +806,10 @@ sub is_chromosome {
|clone
|contig
|genescaffold
- |group
|reftig
|supercontig
|ultracontig
- /x) or ( $coord_system !~ /^chromosome$/i )) {
+ /x) or ( $coord_system !~ /^chromosome$/i && $coord_system !~ /^group$/i ) ) {
return 0;
}
--
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