From f2ef3272710f3b1017c2751c3480441d8ba8ffac Mon Sep 17 00:00:00 2001
From: Magali Ruffier <mr6@ebi.ac.uk>
Date: Mon, 18 Jan 2016 13:24:13 +0000
Subject: [PATCH] use custom-specified otherf database correctly
---
misc-scripts/xref_mapping/XrefParser/RefSeqCoordinateParser.pm | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/misc-scripts/xref_mapping/XrefParser/RefSeqCoordinateParser.pm b/misc-scripts/xref_mapping/XrefParser/RefSeqCoordinateParser.pm
index 1c09306f8e..5959bebef3 100644
--- a/misc-scripts/xref_mapping/XrefParser/RefSeqCoordinateParser.pm
+++ b/misc-scripts/xref_mapping/XrefParser/RefSeqCoordinateParser.pm
@@ -154,9 +154,10 @@ sub run_script {
'-user' => $ofuser,
'-pass' => $ofpass,
'-dbname' => $ofdbname,
- '-species' => $species_name.$ofhost,
+ '-species' => $species_name,
'-group' => 'otherfeatures',
);
+ $otherf_dba->dnadb($core_dba);
} else {
# Else database should be on staging
$registry->load_registry_from_multiple_dbs(
--
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