From f5883deb8f8a39d76fe4dfd72b695ab6627be856 Mon Sep 17 00:00:00 2001
From: Glenn Proctor <gp1@sanger.ac.uk>
Date: Sun, 25 Mar 2007 19:36:39 +0000
Subject: [PATCH] Don't write name projection info to database.
---
misc-scripts/xref_projection/submit_projections.pl | 12 ++++++++----
1 file changed, 8 insertions(+), 4 deletions(-)
diff --git a/misc-scripts/xref_projection/submit_projections.pl b/misc-scripts/xref_projection/submit_projections.pl
index 725dc513d0..8cb242c9de 100644
--- a/misc-scripts/xref_projection/submit_projections.pl
+++ b/misc-scripts/xref_projection/submit_projections.pl
@@ -40,7 +40,7 @@ foreach my $to ("chimp", "opossum", "dog", "cow", "macaque", "chicken", "xenopus
$o = "$dir/names_human_$to.out";
$e = "$dir/names_human_$to.err";
$n = substr("n_hum_$to", 0, 10); # job name display limited to 10 chars
- system "bsub -o $o -e $e -J $n perl project_display_xrefs.pl $opts -from human -to $to -names -delete_names";
+ system "bsub -o $o -e $e -J $n perl project_display_xrefs.pl $opts -from human -to $to -names -delete_names -no_database";
}
# mouse to rat
@@ -48,7 +48,7 @@ foreach my $to ("rat") { # don't need the loop but may add more species later
$o = "$dir/names_mouse_$to.out";
$e = "$dir/names_mouse_$to.err";
$n = substr("n_mou_$to", 0, 10);
- system "bsub -o $o -e $e -J $n perl project_display_xrefs.pl $opts -from mouse -to $to -names -delete_names";
+ system "bsub -o $o -e $e -J $n perl project_display_xrefs.pl $opts -from mouse -to $to -names -delete_names -no_database";
}
# ----------------------------------------
@@ -79,8 +79,12 @@ foreach my $to ("human", "rat", "dog", "chicken", "cow") {
$o = "$dir/go_mouse_$to.out";
$e = "$dir/go_mouse_$to.err";
$n = substr("g_mou_$to", 0, 10);
- my $depend_job_name = substr("g_hum_$to", 0, 10);
- my $d = "-w 'done($depend_job_name)'";
+ my $d;
+ if ($to eq 'human') { # no "human-human" to depend upon
+ $d = '';
+ } else {
+ my $depend_job_name = substr("g_hum_$to", 0, 10);
+ $d = "-w 'ended($depend_job_name)'";
}
system "bsub -o $o -e $e -J $n $d perl project_display_xrefs.pl $opts -from mouse -to $to -go_terms";
}
--
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