From f6626b0f179201f457705b13c2b3c9d12a65bb50 Mon Sep 17 00:00:00 2001
From: Magali Ruffier <mr6@ebi.ac.uk>
Date: Fri, 19 Sep 2014 14:13:06 +0100
Subject: [PATCH] all go depdent xrefs should have a linkage_type
---
misc-scripts/xref_mapping/XrefParser/GOSlimParser.pm | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/misc-scripts/xref_mapping/XrefParser/GOSlimParser.pm b/misc-scripts/xref_mapping/XrefParser/GOSlimParser.pm
index fbc7e7937f..b9866090b0 100644
--- a/misc-scripts/xref_mapping/XrefParser/GOSlimParser.pm
+++ b/misc-scripts/xref_mapping/XrefParser/GOSlimParser.pm
@@ -81,7 +81,7 @@ sub run_script {
$dbi2 = $db->dbi();
}
- my $add_dependent_xref_sth = $self->dbi->prepare("INSERT INTO dependent_xref (master_xref_id,dependent_xref_id, linkage_source_id) VALUES (?,?, $source_id)");
+ my $add_dependent_xref_sth = $self->dbi->prepare("INSERT INTO dependent_xref (master_xref_id,dependent_xref_id, linkage_annotation, linkage_source_id) VALUES (?, ?, 'IEA', $source_id)");
if(!defined($dbi2)){
--
GitLab