From f728dddde6bd664e9d910698eec5c3b65be845c8 Mon Sep 17 00:00:00 2001
From: Web Admin <w3adm@sanger.ac.uk>
Date: Tue, 3 May 2005 15:47:18 +0000
Subject: [PATCH] report mistranslation as a warning rather than an error so
do_XXX_dump utilities don't crash
---
modules/Bio/EnsEMBL/Transcript.pm | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/modules/Bio/EnsEMBL/Transcript.pm b/modules/Bio/EnsEMBL/Transcript.pm
index 0bc391a481..31690c6f56 100755
--- a/modules/Bio/EnsEMBL/Transcript.pm
+++ b/modules/Bio/EnsEMBL/Transcript.pm
@@ -1295,7 +1295,9 @@ sub get_all_translateable_Exons {
# Adjust to translation start if this is the start exon
if ($ex == $start_exon ) {
if ($t_start < 1 or $t_start > $length) {
- throw("Translation start '$t_start' is outside exon $ex length=$length");
+# throw("Translation start '$t_start' is outside exon $ex length=$length");
+ warn("WARN: Translation start '$t_start' is outside exon $ex length=$length");
+ return [];
}
$adjust_start = $t_start - 1;
}
--
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