diff --git a/misc-scripts/xref_projection/submit_projections.pl b/misc-scripts/xref_projection/submit_projections.pl index 8e83e096e6036f496c96274d602b296edfec71db..a32994fe47298b7895826275a7f399410391c18b 100644 --- a/misc-scripts/xref_projection/submit_projections.pl +++ b/misc-scripts/xref_projection/submit_projections.pl @@ -4,11 +4,11 @@ use strict; # Remember to check/set the various config optons # ------------------------------ config ------------------------------- -my $release = 48; +my $release = 50; my $base_dir = "/lustre/scratch1/ensembl/gp1/projections/"; -my $conf = "release_48.ini"; # registry config file, specifies Compara location +my $conf = "release_50.ini"; # registry config file, specifies Compara location # location of other databases my $host = "ens-staging"; @@ -32,7 +32,7 @@ if (! -e $dir) { } # common options -my $script_opts = "-conf $conf -host $host -user $user -port $port -pass $pass -version $release -release $release -quiet -nobackup"; +my $script_opts = "-conf $conf -host $host -user $user -port $port -pass $pass -version $release -release $release -quiet"; #my $bsub_opts = "-R'select[myens-staging<200]'"; my $bsub_opts = ""; @@ -61,6 +61,12 @@ my @names_1_1 = (["human", "chimp" ], ["human", "mouse_lemur" ], ["human", "horse" ], ["human", "orang_utan" ], + ["human", "dolphin" ], + ["human", "hyrax" ], + ["human", "megabat" ], + ["human", "tarsier" ], + ["human", "alpaca" ], + ["mouse", "kangaroo_rat" ], ["mouse", "rat" ]); my @names_1_many = (["human", "zebrafish" ], @@ -92,8 +98,14 @@ my @go_terms = (["human", "mouse" ], ["human", "tree_shrew" ], ["human", "pika" ], ["human", "mouse_lemur" ], - ["human", "horse" ], - ["human", "orang_utan" ], + ["human", "horse" ], + ["human", "orang_utan" ], + ["human", "dolphin" ], + ["human", "hyrax" ], + ["human", "megabat" ], + ["human", "tarsier" ], + ["human", "alpaca" ], + ["human", "kangaroo_rat" ], ["mouse", "human" ], ["mouse", "rat" ], ["mouse", "dog" ], @@ -116,9 +128,15 @@ my @go_terms = (["human", "mouse" ], ["mouse", "squirrel" ], ["mouse", "tree_shrew" ], ["mouse", "pika" ], + ["mouse", "horse" ], + ["mouse", "orang_utan" ], ["mouse", "mouse_lemur" ], - ["human", "horse" ], - ["human", "orang_utan" ], + ["mouse", "dolphin" ], + ["mouse", "hyrax" ], + ["mouse", "megabat" ], + ["mouse", "tarsier" ], + ["mouse", "alpaca" ], + ["mouse", "kangaroo_rat" ], ["rat", "human" ], ["rat", "mouse" ], ["drosophila", "anopheles" ], @@ -128,7 +146,6 @@ my @go_terms = (["human", "mouse" ], ["danio", "tetraodon" ], ["xenopus", "danio" ]); - my ($from, $to, $o, $e, $n); # ----------------------------------------