From f8f6451eb24706ca9611a721e05fc5329a389f1a Mon Sep 17 00:00:00 2001
From: Patrick Meidl <pm2@sanger.ac.uk>
Date: Wed, 27 Jun 2007 12:12:59 +0000
Subject: [PATCH] changed status of some methods from 'At Risk' to 'Stable'
---
modules/Bio/EnsEMBL/DBSQL/GeneAdaptor.pm | 8 ++++----
modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm | 4 ++--
modules/Bio/EnsEMBL/Exon.pm | 3 +--
modules/Bio/EnsEMBL/Feature.pm | 2 +-
modules/Bio/EnsEMBL/Transcript.pm | 3 +--
5 files changed, 9 insertions(+), 11 deletions(-)
diff --git a/modules/Bio/EnsEMBL/DBSQL/GeneAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/GeneAdaptor.pm
index 74d97cb2bf..7925ae40bf 100644
--- a/modules/Bio/EnsEMBL/DBSQL/GeneAdaptor.pm
+++ b/modules/Bio/EnsEMBL/DBSQL/GeneAdaptor.pm
@@ -221,7 +221,7 @@ sub fetch_by_stable_id {
Returntype : listref of Bio::EnsEMBL::Gene
Exceptions : if we cant get the gene in given coord system
Caller : general
- Status : At Risk
+ Status : Stable
=cut
@@ -377,7 +377,7 @@ sub fetch_all_by_domain {
Returntype : reference to list of genes
Exceptions : thrown if exon cannot be placed on transcript slice
Caller :
- Status : At Risk
+ Status : Stable
=cut
@@ -1525,7 +1525,7 @@ sub cache_gene_seq_mappings{
Returntype : Listref of Bio::EnsEMBL::Gene
Exceptions : If feature_type is not of correct type.
Caller : general
- Status : At Risk
+ Status : Stable
=cut
@@ -1590,7 +1590,7 @@ sub fetch_all_by_exon_supporting_evidence {
Returntype : Listref of Bio::EnsEMBL::Gene
Exceptions : If feature_type is not of correct type.
Caller : general
- Status : At Risk
+ Status : Stable
=cut
diff --git a/modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm
index cd5320d551..7ff944995e 100644
--- a/modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm
+++ b/modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm
@@ -1326,7 +1326,7 @@ sub _objs_from_sth {
Returntype : Listref of Bio::EnsEMBL::Transcript objects
Exceptions : If feature_type is not of correct type.
Caller : general
- Status : At Risk
+ Status : Stable
=cut
@@ -1391,7 +1391,7 @@ sub fetch_all_by_exon_supporting_evidence {
Returntype : Listref of Bio::EnsEMBL::Transcript objects
Exceptions : If feature_type is not of correct type.
Caller : general
- Status : At Risk
+ Status : Stable
=cut
diff --git a/modules/Bio/EnsEMBL/Exon.pm b/modules/Bio/EnsEMBL/Exon.pm
index a8915f968a..1e0c6c2b84 100755
--- a/modules/Bio/EnsEMBL/Exon.pm
+++ b/modules/Bio/EnsEMBL/Exon.pm
@@ -956,8 +956,7 @@ sub add_supporting_features {
Return type : (Empty) listref
Exceptions : none
Caller : general
- Status : At Risk
- : under development
+ Status : Stable
=cut
diff --git a/modules/Bio/EnsEMBL/Feature.pm b/modules/Bio/EnsEMBL/Feature.pm
index 0e44dd3554..97cb7e2444 100644
--- a/modules/Bio/EnsEMBL/Feature.pm
+++ b/modules/Bio/EnsEMBL/Feature.pm
@@ -1051,7 +1051,7 @@ sub get_all_alt_locations {
Returntype : TRUE if features overlap, FALSE if they don't
Exceptions : warning if features are on different seq_regions
Caller : general
- Status : At Risk
+ Status : Stable
=cut
diff --git a/modules/Bio/EnsEMBL/Transcript.pm b/modules/Bio/EnsEMBL/Transcript.pm
index dda27797b7..5196a89f6c 100755
--- a/modules/Bio/EnsEMBL/Transcript.pm
+++ b/modules/Bio/EnsEMBL/Transcript.pm
@@ -358,8 +358,7 @@ sub add_supporting_features {
Return type : (Empty) listref
Exceptions : none
Caller : general
- Status : At Risk
- : under development
+ Status : Stable
=cut
--
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