From f996de51d58e1fed7120be642ce5c6db5b8a09de Mon Sep 17 00:00:00 2001
From: Patrick Meidl <pm2@sanger.ac.uk>
Date: Fri, 18 Apr 2008 09:29:25 +0000
Subject: [PATCH] added LOAD_INSTANCE to Cache->new()
---
misc-scripts/id_mapping/id_mapping.pl | 6 +++---
misc-scripts/id_mapping/synteny_rescore.pl | 6 +++---
2 files changed, 6 insertions(+), 6 deletions(-)
diff --git a/misc-scripts/id_mapping/id_mapping.pl b/misc-scripts/id_mapping/id_mapping.pl
index b21fd69057..e9576a408b 100755
--- a/misc-scripts/id_mapping/id_mapping.pl
+++ b/misc-scripts/id_mapping/id_mapping.pl
@@ -127,10 +127,10 @@ my $translation_mappings;
# loading cache from file
my $cache = Bio::EnsEMBL::IdMapping::Cache->new(
- -LOGGER => $logger,
- -CONF => $conf,
+ -LOGGER => $logger,
+ -CONF => $conf,
+ -LOAD_INSTANCE => 1,
);
-$cache->read_instance_from_file;
# get a stable ID mapper
diff --git a/misc-scripts/id_mapping/synteny_rescore.pl b/misc-scripts/id_mapping/synteny_rescore.pl
index bb79167fcd..2cdfa4baf0 100755
--- a/misc-scripts/id_mapping/synteny_rescore.pl
+++ b/misc-scripts/id_mapping/synteny_rescore.pl
@@ -89,10 +89,10 @@ my $logger = new Bio::EnsEMBL::Utils::Logger(
# loading cache from file
my $cache = Bio::EnsEMBL::IdMapping::Cache->new(
- -LOGGER => $logger,
- -CONF => $conf,
+ -LOGGER => $logger,
+ -CONF => $conf,
+ -LOAD_INSTANCE => 1,
);
-$cache->read_instance_from_file;
# load SyntenyFramework and gene ScoredMappingMatrix from files
my $basedir = $conf->param('basedir');
--
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