From f99a7dec6ed9f47c1a8dec2e341b7945d36fe73e Mon Sep 17 00:00:00 2001
From: Magali Ruffier <mr6@ebi.ac.uk>
Date: Fri, 10 Aug 2012 15:52:48 +0000
Subject: [PATCH] separate flow for vega databases as does not exist for all
species
---
modules/Bio/EnsEMBL/Pipeline/PipeConfig/Core_handover_conf.pm | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/modules/Bio/EnsEMBL/Pipeline/PipeConfig/Core_handover_conf.pm b/modules/Bio/EnsEMBL/Pipeline/PipeConfig/Core_handover_conf.pm
index 987303a8f1..cc636a78ec 100644
--- a/modules/Bio/EnsEMBL/Pipeline/PipeConfig/Core_handover_conf.pm
+++ b/modules/Bio/EnsEMBL/Pipeline/PipeConfig/Core_handover_conf.pm
@@ -65,8 +65,9 @@ sub pipeline_analyses {
'B->3' => ['PercentGC'],
'3->C' => ['CodingDensity'],
'C->3' => ['NonCodingDensity'],
+ '5->A' => ['ConstitutiveExonsVega', 'PepStatsVega'],
'3->A' => ['PercentRepeat', 'CodingDensity', 'NonCodingDensity', 'PercentGC'],
- '2->A' => ['GeneGC', 'PepStats', 'GeneCount', 'ConstitutiveExons', 'ConstitutiveExonsVega', 'PepStatsVega'],
+ '2->A' => ['GeneGC', 'PepStats', 'GeneCount', 'ConstitutiveExons'],
'A->1' => ['Notify'],
},
},
--
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