From fb2da171aab97ababbb2acc64f31d7a02046e1d6 Mon Sep 17 00:00:00 2001
From: Arne Stabenau <stabenau@sanger.ac.uk>
Date: Thu, 11 Oct 2001 15:13:14 +0000
Subject: [PATCH] contig_landmarkMarker table renamed and columns in it
renamed. Code changed accordingly.
---
modules/Bio/EnsEMBL/Virtual/StaticContig.pm | 14 ++++++++------
1 file changed, 8 insertions(+), 6 deletions(-)
diff --git a/modules/Bio/EnsEMBL/Virtual/StaticContig.pm b/modules/Bio/EnsEMBL/Virtual/StaticContig.pm
index cb85124aeb..3db2a7fb85 100755
--- a/modules/Bio/EnsEMBL/Virtual/StaticContig.pm
+++ b/modules/Bio/EnsEMBL/Virtual/StaticContig.pm
@@ -1379,6 +1379,8 @@ sub get_landmark_MarkerFeatures_old {
my ($self) = @_;
+$self->throw( "Method deprecated." );
+
my $glob_start = $self->_global_start;
my $glob_end = $self->_global_end;
my $length = $self->length;
@@ -1481,14 +1483,14 @@ sub get_landmark_MarkerFeatures{
my $length = $self->length;
- my $statement= " SELECT start,
- end,
- strand,
+ my $statement= " SELECT chr_start,
+ chr_end,
+ chr_strand,
name
- FROM contig_landmarkMarker
+ FROM landmarkMarker
WHERE chr_name = '$chr_name'
- AND start >= $glob_start
- AND end <= $glob_end
+ AND chr_start >= $glob_start
+ AND chr_end <= $glob_end
ORDER BY start
";
--
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