From fb2e825087eda07db3c2ac7651e78bdee7f98e6d Mon Sep 17 00:00:00 2001 From: Monika Komorowska <mk8@sanger.ac.uk> Date: Mon, 25 Jun 2012 15:31:14 +0000 Subject: [PATCH] added another parameter to CoreXrefParser --- misc-scripts/xref_mapping/xref_config.ini | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/misc-scripts/xref_mapping/xref_config.ini b/misc-scripts/xref_mapping/xref_config.ini index 56e235f2d8..0b619cc92a 100644 --- a/misc-scripts/xref_mapping/xref_config.ini +++ b/misc-scripts/xref_mapping/xref_config.ini @@ -3144,7 +3144,7 @@ priority = 1 prio_descr = parser = CoreXrefParser release_uri = -data_uri = script:object_type=>gene,project=>ensemblgenomes, +data_uri = script:object_type=>gene,project=>ensemblgenomes,copy_description_from_object=>1, [source miRBase::MULTI] @@ -3158,6 +3158,7 @@ parser = miRBaseParser release_uri = data_uri = ftp://mirbase.org/pub/mirbase/CURRENT/miRNA.dat.gz + [source miRBase_gene_name] # Used homo_sapiens,mus_musculus name = miRBase_gene_name @@ -3213,7 +3214,7 @@ priority = 1 prio_descr = parser = CoreXrefParser release_uri = -data_uri = script:biotype=>rRNA,object_type=>gene,project=>ensemblgenomes, +data_uri = script:biotype=>rRNA,object_type=>gene,project=>ensemblgenomes,copy_description_from_object=>1, [source TRNASCAN_SE::MULTI] @@ -3225,7 +3226,7 @@ priority = 1 prio_descr = parser = CoreXrefParser release_uri = -data_uri = script:biotype=>tRNA,object_type=>gene,project=>ensemblgenomes, +data_uri = script:biotype=>tRNA,object_type=>gene,project=>ensemblgenomes,copy_description_from_object=>1, [source misc_EG::EG] # Used by EnsemblGenomes to maintain sources of xrefs which don't have a proper parser yet. -- GitLab