diff --git a/DEPRECATED.md b/DEPRECATED.md
index aeed6620d078fe9dd2ae74ead532ad187401a70c..bdda2fdaccb38512fdbd7d9eaee0e757097a55c3 100644
--- a/DEPRECATED.md
+++ b/DEPRECATED.md
@@ -93,10 +93,6 @@ A year after deprecation (4 Ensembl releases), the method is removed from the AP
  - Bio::EnsEMBL::**Slice**::*calculate_theta()*
  - Bio::EnsEMBL::**Slice**::*get_all_IndividualSlice()*
  - Bio::EnsEMBL::**Slice**::*get_by_Individual()*
- - Bio::EnsEMBL::**Slice**::*get_all_somatic_VariationFeatures()*
- - Bio::EnsEMBL::**Slice**::*get_all_somatic_VariationFeatures_by_source()*
- - Bio::EnsEMBL::**Slice**::*get_all_somatic_VariationFeatures_with_phenotype()*
- - Bio::EnsEMBL::**Slice**::*get_all_VariationFeatures_by_Population()*
  - Bio::EnsEMBL::**Slice**::*get_by_strain()*
  - Bio::EnsEMBL::**Slice**::*_calculate_a*