Commit fc4990b5 authored by Tiago Grego's avatar Tiago Grego
Browse files

patched test dbs with patch_96_97_b and updated fixtures

parent 5415237e
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Tue Feb 12 11:45:04 2019
-- Created on Tue Feb 12 15:00:15 2019
--
BEGIN TRANSACTION;
......@@ -142,7 +142,8 @@ CREATE TABLE "biotype" (
"attrib_type_id" integer,
"description" text,
"biotype_group" enum,
"so_acc" varchar(64)
"so_acc" varchar(64),
"so_term" varchar(1023)
);
CREATE UNIQUE INDEX "name_type_idx" ON "biotype" ("name", "object_type");
......
......@@ -127,3 +127,4 @@
127 \N patch patch_94_95_c.sql|ox_key_update
128 \N patch patch_95_96_a.sql|schema_version
129 \N patch patch_96_97_a.sql|schema_version
130 \N patch patch_96_97_b.sql|biotype_so_term
......@@ -114,6 +114,7 @@ CREATE TABLE `biotype` (
`description` text,
`biotype_group` enum('coding','pseudogene','snoncoding','lnoncoding','mnoncoding','LRG','undefined','no_group') DEFAULT NULL,
`so_acc` varchar(64) DEFAULT NULL,
`so_term` varchar(1023) DEFAULT NULL,
PRIMARY KEY (`biotype_id`),
UNIQUE KEY `name_type_idx` (`name`,`object_type`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
......@@ -489,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=130 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=131 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Tue Feb 12 11:45:08 2019
-- Created on Tue Feb 12 15:00:19 2019
--
BEGIN TRANSACTION;
......@@ -142,7 +142,8 @@ CREATE TABLE "biotype" (
"attrib_type_id" integer,
"description" text,
"biotype_group" enum,
"so_acc" varchar(64)
"so_acc" varchar(64),
"so_term" varchar(1023)
);
CREATE UNIQUE INDEX "name_type_idx" ON "biotype" ("name", "object_type");
......
64 protein_coding gene core,otherfeatures,rnaseq,vega,presite \N \N coding SO:0001217
65 protein_coding transcript core,otherfeatures,rnaseq,vega,presite \N \N coding SO:0000234
87 tRNA gene core,otherfeatures,presite 76 \N snoncoding SO:0001263
64 protein_coding gene core,otherfeatures,rnaseq,vega,presite \N \N coding SO:0001217 protein_coding_gene
65 protein_coding transcript core,otherfeatures,rnaseq,vega,presite \N \N coding SO:0000234 mRNA
87 tRNA gene core,otherfeatures,presite 76 \N snoncoding SO:0001263 ncRNA_gene
......@@ -106,3 +106,4 @@
173 \N patch patch_94_95_c.sql|ox_key_update
174 \N patch patch_95_96_a.sql|schema_version
175 \N patch patch_96_97_a.sql|schema_version
176 \N patch patch_96_97_b.sql|biotype_so_term
......@@ -114,6 +114,7 @@ CREATE TABLE `biotype` (
`description` text,
`biotype_group` enum('coding','pseudogene','snoncoding','lnoncoding','mnoncoding','LRG','undefined','no_group') DEFAULT NULL,
`so_acc` varchar(64) DEFAULT NULL,
`so_term` varchar(1023) DEFAULT NULL,
PRIMARY KEY (`biotype_id`),
UNIQUE KEY `name_type_idx` (`name`,`object_type`)
) ENGINE=MyISAM AUTO_INCREMENT=88 DEFAULT CHARSET=latin1;
......@@ -489,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=176 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=177 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Tue Feb 12 11:45:11 2019
-- Created on Tue Feb 12 15:00:22 2019
--
BEGIN TRANSACTION;
......@@ -142,7 +142,8 @@ CREATE TABLE "biotype" (
"attrib_type_id" integer,
"description" text,
"biotype_group" enum,
"so_acc" varchar(64)
"so_acc" varchar(64),
"so_term" varchar(1023)
);
CREATE UNIQUE INDEX "name_type_idx" ON "biotype" ("name", "object_type");
......
......@@ -106,3 +106,4 @@
155 \N patch patch_94_95_c.sql|ox_key_update
156 \N patch patch_95_96_a.sql|schema_version
157 \N patch patch_96_97_a.sql|schema_version
158 \N patch patch_96_97_b.sql|biotype_so_term
......@@ -114,6 +114,7 @@ CREATE TABLE `biotype` (
`description` text,
`biotype_group` enum('coding','pseudogene','snoncoding','lnoncoding','mnoncoding','LRG','undefined','no_group') DEFAULT NULL,
`so_acc` varchar(64) DEFAULT NULL,
`so_term` varchar(1023) DEFAULT NULL,
PRIMARY KEY (`biotype_id`),
UNIQUE KEY `name_type_idx` (`name`,`object_type`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
......@@ -489,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=158 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=159 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Tue Feb 12 11:45:14 2019
-- Created on Tue Feb 12 15:00:25 2019
--
BEGIN TRANSACTION;
......@@ -142,7 +142,8 @@ CREATE TABLE "biotype" (
"attrib_type_id" integer,
"description" text,
"biotype_group" enum,
"so_acc" varchar(64)
"so_acc" varchar(64),
"so_term" varchar(1023)
);
CREATE UNIQUE INDEX "name_type_idx" ON "biotype" ("name", "object_type");
......
......@@ -111,3 +111,4 @@
2118 \N patch patch_94_95_c.sql|ox_key_update
2119 \N patch patch_95_96_a.sql|schema_version
2120 \N patch patch_96_97_a.sql|schema_version
2121 \N patch patch_96_97_b.sql|biotype_so_term
......@@ -114,6 +114,7 @@ CREATE TABLE `biotype` (
`description` text,
`biotype_group` enum('coding','pseudogene','snoncoding','lnoncoding','mnoncoding','LRG','undefined','no_group') DEFAULT NULL,
`so_acc` varchar(64) DEFAULT NULL,
`so_term` varchar(1023) DEFAULT NULL,
PRIMARY KEY (`biotype_id`),
UNIQUE KEY `name_type_idx` (`name`,`object_type`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
......@@ -489,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=2121 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=2122 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Tue Feb 12 11:45:15 2019
-- Created on Tue Feb 12 15:00:26 2019
--
BEGIN TRANSACTION;
......
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Tue Feb 12 11:45:18 2019
-- Created on Tue Feb 12 15:00:29 2019
--
BEGIN TRANSACTION;
......@@ -142,7 +142,8 @@ CREATE TABLE "biotype" (
"attrib_type_id" integer,
"description" text,
"biotype_group" enum,
"so_acc" varchar(64)
"so_acc" varchar(64),
"so_term" varchar(1023)
);
CREATE UNIQUE INDEX "name_type_idx" ON "biotype" ("name", "object_type");
......
......@@ -67,3 +67,4 @@
160 \N patch patch_94_95_c.sql|ox_key_update
161 \N patch patch_95_96_a.sql|schema_version
162 \N patch patch_96_97_a.sql|schema_version
163 \N patch patch_96_97_b.sql|biotype_so_term
......@@ -114,6 +114,7 @@ CREATE TABLE `biotype` (
`description` text,
`biotype_group` enum('coding','pseudogene','snoncoding','lnoncoding','mnoncoding','LRG','undefined','no_group') DEFAULT NULL,
`so_acc` varchar(64) DEFAULT NULL,
`so_term` varchar(1023) DEFAULT NULL,
PRIMARY KEY (`biotype_id`),
UNIQUE KEY `name_type_idx` (`name`,`object_type`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
......@@ -489,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=163 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=164 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Tue Feb 12 11:45:21 2019
-- Created on Tue Feb 12 15:00:32 2019
--
BEGIN TRANSACTION;
......
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Tue Feb 12 11:45:24 2019
-- Created on Tue Feb 12 15:00:36 2019
--
BEGIN TRANSACTION;
......@@ -142,7 +142,8 @@ CREATE TABLE "biotype" (
"attrib_type_id" integer,
"description" text,
"biotype_group" enum,
"so_acc" varchar(64)
"so_acc" varchar(64),
"so_term" varchar(1023)
);
CREATE UNIQUE INDEX "name_type_idx" ON "biotype" ("name", "object_type");
......
......@@ -184,3 +184,4 @@
1696 \N patch patch_94_95_c.sql|ox_key_update
1697 \N patch patch_95_96_a.sql|schema_version
1698 \N patch patch_96_97_a.sql|schema_version
1699 \N patch patch_96_97_b.sql|biotype_so_term
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