diff --git a/modules/Bio/EnsEMBL/Utils/BiotypeMapper.pm b/modules/Bio/EnsEMBL/Utils/BiotypeMapper.pm index 8e28f73fdb6b2a1f4e1c162bf43eb381655b51f4..212fbb9978c1d83c45575662ab1ef135f58d8f14 100644 --- a/modules/Bio/EnsEMBL/Utils/BiotypeMapper.pm +++ b/modules/Bio/EnsEMBL/Utils/BiotypeMapper.pm @@ -139,7 +139,8 @@ my %grouping_of_biotypes = ( IG_J_gene TR_J_gene IG_D_gene IG_C_gene TR_C_gene pseudogene retrotransposed IG_V_pseudogene TR_V_pseudogene IG_J_pseudogene IG_C_pseudogene processed_transcript - + antisense ambiguous_orf transcribed_processed_pseudogene + disrupted_domain )], 'peptide_producing' => [qw( protein_coding polymorphic_pseudogene IG_V_gene TR_V_gene IG_J_gene TR_J_gene IG_D_gene IG_C_gene TR_C_gene @@ -147,7 +148,7 @@ my %grouping_of_biotypes = ( 'ncRNA' => [qw( ncRNA miRNA miRNA_pseudogene misc_RNA misc_RNA_pseudogene Mt_tRNA Mt_tRNA_pseudogene Mt_rRNA rRNA rRNA_pseudogene scRNA_pseudogene snoRNA snoRNA_pseudogene snRNA snRNA_pseudogene tRNA_pseudogene - 3prime_overlapping_ncrna antisense lincRNA ncrna_host non_coding + 3prime_overlapping_ncrna lincRNA ncrna_host non_coding sense_intronic sense_overlapping tRNA )], ); @@ -163,7 +164,7 @@ my %grouping_of_biotypes = ( sub new { my $class = shift; my $self = { - ontology_adaptor => shift, + ontology_adaptor => shift, }; bless $self, $class;