From fff35314b1e4b9bb4b8b68d1649671127373fceb Mon Sep 17 00:00:00 2001
From: Kieron Taylor <ktaylor@ebi.ac.uk>
Date: Tue, 1 Oct 2013 15:52:02 +0000
Subject: [PATCH] Fixed a warning that was testing the wrong value and failing
to verify a store_alt_alleles call properly
---
modules/Bio/EnsEMBL/DBSQL/GeneAdaptor.pm | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/modules/Bio/EnsEMBL/DBSQL/GeneAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/GeneAdaptor.pm
index 61d5253f4a..c80afd6764 100644
--- a/modules/Bio/EnsEMBL/DBSQL/GeneAdaptor.pm
+++ b/modules/Bio/EnsEMBL/DBSQL/GeneAdaptor.pm
@@ -1057,7 +1057,7 @@ sub store_alt_alleles {
my $aag = Bio::EnsEMBL::AltAlleleGroup->new(
-MEMBERS => $allele_list,
);
- if ($aag->get_all_members_with_type('IS_REPRESENTATIVE') != 1) {
+ if (scalar( @{$aag->get_all_members_with_type('IS_REPRESENTATIVE')} ) != 1) {
warning('Inappropriate number of alternative alleles on the reference sequence. Ignoring.');
return;
}
--
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