Commits · 0ae61e75f7d0dd2f5a0f8a993194d0b937fc8897 · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Jul 07, 2022.

07 Jun, 2006 1 commit
- mapping fixes to use seq_region_id instead pf names · 0ae61e75
  Ian Longden authored Jun 07, 2006
  
  0ae61e75
10 May, 2006 1 commit
- fixes and STDERR prints added · 275378ff
  Ian Longden authored May 10, 2006
  
  275378ff
10 Apr, 2006 1 commit

Added fetch_all_by_logic_name method - "Returns a listref of features created... · 8a45fdd9

Will Spooner authored Apr 10, 2006

Added fetch_all_by_logic_name method - "Returns a listref of features created from the database. Only features with an analysis of type $logic_name will be returned."

8a45fdd9

23 Nov, 2005 1 commit

modified execute calls to make compatible with other databases. Need to use... · 284ac731

Daniel Rios authored Nov 23, 2005

modified execute calls to make compatible with other databases. Need to use bind_param first, with the type of the parameter, and execute later

284ac731

12 Aug, 2005 1 commit
- status reports added plus some tiding up of docs · d1b8f7f5
  Ian Longden authored Aug 12, 2005
  
  d1b8f7f5
30 Mar, 2005 1 commit
- allow for undef returned as mapper from AssemblyMapperAdaptor · 3eacfbc0
  Arne Stabenau authored Mar 30, 2005
  
  3eacfbc0
03 Dec, 2004 1 commit

· 2330bf3e

Laura Clarke authored Dec 03, 2004

changes to make the filling out the meta_coord.max_length column on the fly work

2330bf3e

21 Oct, 2004 1 commit
- changed to get variationfeatures from a slice · f07d9c0a
  Fiona Cunningham authored Oct 21, 2004
  
  f07d9c0a
16 Sep, 2004 1 commit
- moved query constructors to BaseAdaptor module · 847ebd02
  Daniel Rios authored Sep 16, 2004
  
  847ebd02
13 Aug, 2004 1 commit
- max feature length can be overridden, allows optimization for misc feature retrieval · a032c47c
  Graham McVicker authored Aug 13, 2004
  
  a032c47c
12 Aug, 2004 1 commit
- make use of meta_coord.max_length to further optomize generated feature queries · 016d40c8
  Graham McVicker authored Aug 12, 2004
  
  016d40c8
04 Aug, 2004 1 commit
- removed deleteObj methods which were formerly called by the Container · 2a541cb4
  Graham McVicker authored Aug 04, 2004
  
  2a541cb4
30 Jul, 2004 1 commit
- DBAdaptor method db renamed dbc to stop confusion so all references to this have been changed · c8fcd6c2
  Ian Longden authored Jul 30, 2004
  
  c8fcd6c2
29 Jul, 2004 1 commit
- Registry modifications · ff0713ae
  Ian Longden authored Jul 29, 2004
  
  ff0713ae
26 May, 2004 1 commit
- removed superfluous if statement · 2b407be2
  Graham McVicker authored May 26, 2004
  
  2b407be2
23 Apr, 2004 1 commit
- made remap method static · b07e9eb4
  Graham McVicker authored Apr 23, 2004
  
  b07e9eb4
22 Apr, 2004 2 commits
- fixed bug made by last commit, and added pruning of features which cross hap/par boundaries · 866e8c96
  Graham McVicker authored Apr 22, 2004
  
  866e8c96
- tidied and split large fetch_all_by_Slice_constraint method into 2 smaller methods · c4a5cddc
  Graham McVicker authored Apr 22, 2004
  
  c4a5cddc
21 Apr, 2004 1 commit
- $keep_all flag no longer needed in generic_fetch; formatting · 28250ddd
  Graham McVicker authored Apr 21, 2004
  
  28250ddd
01 Apr, 2004 1 commit
- removed shouts · a899fe85
  Web Admin authored Apr 01, 2004
  
  a899fe85
31 Mar, 2004 1 commit

Moved meta_coord table information retrieval/storage out of CoordSystemAdaptor... · ca440f91

Graham McVicker authored Mar 31, 2004

Moved meta_coord table information retrieval/storage out of CoordSystemAdaptor and into new MetaCoordContainer class.  This was causing problems because the meta coord information should be stored/retrieved in the feature database and the coord system information should be stored/retrieved in the dna database

ca440f91

30 Mar, 2004 1 commit
- *** empty log message *** · 69e029da
  James Stalker authored Mar 30, 2004
  
  69e029da
29 Mar, 2004 3 commits
- took out debug statement, unintentionally commited · 39d24500
  Graham McVicker authored Mar 29, 2004
  
  39d24500
- added in ability to specify straight_joins for certain queries · d03eb193
  Graham McVicker authored Mar 29, 2004
  
  d03eb193
- changed throw msg · 1bba4c00
  Graham McVicker authored Mar 29, 2004
  
  1bba4c00
16 Feb, 2004 2 commits
- removed js5 debugging messages · 6512b2a2
  Graham McVicker authored Feb 16, 2004
  
  6512b2a2
- js5 tidy query · 37e1ec4a
  Web Admin authored Feb 16, 2004
  
  37e1ec4a
27 Jan, 2004 1 commit
- meta_coord info is now stored both in dnadb and feature db when storing features · 975c2c87
  Graham McVicker authored Jan 27, 2004
  
  975c2c87
16 Jan, 2004 1 commit
- POD updates · 6c9f5d0f
  Graham McVicker authored Jan 16, 2004
  
  6c9f5d0f
09 Jan, 2004 1 commit
- Merged in the new-seqstore into HEAD version · fc6ced68
  Arne Stabenau authored Jan 09, 2004
  
  fc6ced68
25 Mar, 2003 1 commit
- removed warn, shouldnt have been committed · ea9ebe09
  Arne Stabenau authored Mar 25, 2003
  
  ea9ebe09
24 Mar, 2003 1 commit
- fix cache and DBentry problems · 4b728760
  Web Admin authored Mar 24, 2003
  
  4b728760
19 Mar, 2003 1 commit
- make feature caching case insensitive (i.e. slice on chr 'X' or 'x' is same slice) · cf9ddc4f
  Graham McVicker authored Mar 19, 2003
  
  cf9ddc4f
17 Feb, 2003 1 commit
- Fix to remove() - use self->_tables rather than self->_tablename · 27c18830
  Val Curwen authored Feb 17, 2003
  
  27c18830
28 Jan, 2003 1 commit
- changed internal structure of BaseFeatureAdaptor a bit · 989285d9
  Graham McVicker authored Jan 28, 2003
```
fixes RepeatFeatureAdaptor::fetch_by_dbID
```
  989285d9
22 Jan, 2003 1 commit
- got rid of a nasty memory leak with DnaAlignFeatures · ec23b296
  Graham McVicker authored Jan 22, 2003
  
  ec23b296
22 Nov, 2002 1 commit
- removed deprecated methods · a64aa50e
  Graham McVicker authored Nov 22, 2002
  
  a64aa50e
14 Nov, 2002 1 commit
- List ref fix. · f0937e0e
  Alistair Rust authored Nov 14, 2002
  
  f0937e0e
13 Nov, 2002 2 commits
- remove_RawContig -> remove_by_RawContig · bcaabc50
  Alistair Rust authored Nov 13, 2002
  
  bcaabc50
- - Removed delete_by_RawContig_id method. · e8cb5843
  Alistair Rust authored Nov 13, 2002
```
- Replaced with remove_RawContig.
```
  e8cb5843