Commits · 0ae61e75f7d0dd2f5a0f8a993194d0b937fc8897 · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Jul 07, 2022.

07 Jun, 2006 1 commit
- mapping fixes to use seq_region_id instead pf names · 0ae61e75
  Ian Longden authored Jun 07, 2006
  
  0ae61e75
10 May, 2006 1 commit
- Fixes and STDERR prints. storing fro safe keeping (nearly therecvs up) · 1d8b2da9
  Ian Longden authored May 10, 2006
  
  1d8b2da9
29 Mar, 2006 2 commits
- minor refinement to overlaps() · e70da1f0
  Patrick Meidl authored Mar 29, 2006
  
  e70da1f0
- added check for same seq_region to overlaps(), now method is no longer deprectated · 9edf71c8
  Patrick Meidl authored Mar 29, 2006
  
  9edf71c8
12 Aug, 2005 1 commit
- status reports added plus some tiding up of docs · d1b8f7f5
  Ian Longden authored Aug 12, 2005
  
  d1b8f7f5
06 Aug, 2004 1 commit
- corrected out of date documentation · a25ee9e9
  Graham McVicker authored Aug 06, 2004
  
  a25ee9e9
21 Jun, 2004 1 commit
- Added seq_region_length convenience method · c8a67e77
  Will Spooner authored Jun 21, 2004
  
  c8a67e77
18 Jun, 2004 1 commit
- Added a "coord_system_name" method which Gets the name of the coord_system... · 58812a13
  Will Spooner authored Jun 18, 2004
```
Added a "coord_system_name" method which Gets the name of the coord_system which this feature/slice is on
```
  58812a13
15 Jun, 2004 1 commit
- allow end to be one less than start so that we can handle insertions · 9d471c43
  Graham McVicker authored Jun 15, 2004
  
  9d471c43
24 May, 2004 1 commit
- Allow slices to be created without CoordSystem or Adaptor · 1bd3995a
  Graham McVicker authored May 24, 2004
  
  1bd3995a
13 May, 2004 1 commit
- removed warns · e6d538d2
  Graham McVicker authored May 13, 2004
  
  e6d538d2
11 May, 2004 1 commit
- added call feature_Slice · 51eff735
  Arne Stabenau authored May 11, 2004
  
  51eff735
08 May, 2004 1 commit
- fixed to include switch in get_all_alt_locations.... · 50f412ae
  Web Admin authored May 08, 2004
  
  50f412ae
06 May, 2004 1 commit
- get_all_alt_allel doesnt return HAP locations for REF things · 0fa75a13
  Arne Stabenau authored May 06, 2004
  
  0fa75a13
29 Apr, 2004 1 commit

· 2ee1c609

Laura Clarke authored Apr 29, 2004

bug fix in Bio::EnsEMBL::Feature
added import of warning method into DnaAlignFeatureAdaptor

2ee1c609

23 Apr, 2004 2 commits
- Feature::transfer now returns undef rather than throwing if the slice to... · ac9346cb
  Graham McVicker authored Apr 23, 2004
```
Feature::transfer now returns undef rather than throwing if the slice to transfer to is on different seq_region
```
  ac9346cb
- added get_all_alt_locations method · 2351bc35
  Graham McVicker authored Apr 23, 2004
  
  2351bc35
02 Mar, 2004 1 commit
- warn and return undef is sequence is requested for unstranded feature · b43cdd55
  Graham McVicker authored Mar 02, 2004
  
  b43cdd55
25 Feb, 2004 1 commit
- throw if undefined coord systems are used for transform/project calls · ac8e396b
  Graham McVicker authored Feb 25, 2004
  
  ac8e396b
23 Feb, 2004 1 commit
- feature::seq now gets the sequence from its attached slice rather than going through adaptor · 0bb11142
  Graham McVicker authored Feb 23, 2004
  
  0bb11142
11 Feb, 2004 1 commit
- modifications so that toplevel is now a pseudo coordinate system representing... · f4036606
  Graham McVicker authored Feb 11, 2004
```
modifications so that toplevel is now a pseudo coordinate system representing the highest real coordinate system in a given region
```
  f4036606
06 Feb, 2004 1 commit

Changed Feature::overlaps so that all it does is a simple integer range... · 10523a09

Graham McVicker authored Feb 06, 2004

Changed Feature::overlaps so that all it does is a simple integer range comparison, ignoring the possibility that the features could be on different seq_regions.

10523a09

29 Jan, 2004 1 commit
- handle features that only have seqnames (and no slices!) · f6753cbf
  Arne Stabenau authored Jan 29, 2004
  
  f6753cbf
27 Jan, 2004 1 commit
- overlaps function added. · b0ec954c
  Arne Stabenau authored Jan 27, 2004
  
  b0ec954c
22 Jan, 2004 1 commit
- added seq call on feature · 57b1601b
  Arne Stabenau authored Jan 22, 2004
  
  57b1601b
16 Jan, 2004 1 commit
- seq_region_start|end could have returned undef inappropraitely when one (but... · f3591508
  Graham McVicker authored Jan 16, 2004
```
seq_region_start|end could have returned undef inappropraitely when one (but not both) of the features end|start was undefined
```
  f3591508
15 Jan, 2004 1 commit
- added seq_region_* convenience methods · 19496b77
  Graham McVicker authored Jan 15, 2004
  
  19496b77
09 Jan, 2004 1 commit
- Merged in the new-seqstore into HEAD version · fc6ced68
  Arne Stabenau authored Jan 09, 2004
  
  fc6ced68
22 Sep, 2003 2 commits
- wrong branch · 8ef77886
  Graham McVicker authored Sep 22, 2003
  
  8ef77886
- Trying to commit changes for Graham McVicker (mcvicker) · f04c75a4
  mrae authored Sep 22, 2003
  
  f04c75a4