Commits · 0d19e0bdfc05b33b0491511fee01ed98136e449d · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Aug 11, 2022.

19 Apr, 2001 1 commit
- mapping dev · 0d19e0bd
  Emmanuel Mongin authored Apr 19, 2001
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E.
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  0d19e0bd
18 Apr, 2001 3 commits
- Few changes, added a script to load the mapping into the database · 0a56de8c
  Emmanuel Mongin authored Apr 18, 2001
  
  0a56de8c
- Added FeatureAdaptor, a test for it and RawContigAdaptor. Didn't touch... · 3048a7ba
  Imre Vastrik authored Apr 18, 2001
```
Added FeatureAdaptor, a test for it and RawContigAdaptor. Didn't touch Feature_Obj, so there's no pressure to use FeatureAdaptor yet. I'll do it after how-to stuff
```
  3048a7ba
- Added family stuff to protein object · f9288d66
  Emmanuel Mongin authored Apr 18, 2001
  
  f9288d66
17 Apr, 2001 2 commits
- don'remember codded in the plane few days ago... · 12a6ff12
  Emmanuel Mongin authored Apr 17, 2001
  
  12a6ff12
- 10 tests added · 4652a7d4
  Emmanuel Mongin authored Apr 17, 2001
  
  4652a7d4
11 Apr, 2001 12 commits
- Added get_Clone_by_version · 87bfdde8
  Ensembl Pipeline authored Apr 11, 2001
```
get_Clone now returns clone with highest embl_version
Updated tests

scp
```
  87bfdde8
- got rid of standard settings, TimDB stuff and some ambiguities · 3d2d5485
  Philip Lijnzaad authored Apr 11, 2001
  
  3d2d5485
- added on main branch; not tested or used yet, maybe even never · 523885ca
  Philip Lijnzaad authored Apr 11, 2001
  
  523885ca
- font-lock pacification · ec5a6493
  Philip Lijnzaad authored Apr 11, 2001
  
  ec5a6493
- now uses the `new` (since January 6th ...) convention using local exon coords for start and end · 5e6ae3b5
  Philip Lijnzaad authored Apr 11, 2001
  
  5e6ae3b5
- added goldenpathtype · 8c942126
  Philip Lijnzaad authored Apr 11, 2001
  
  8c942126
- signature of by_igi_number changed · 4c77e7bf
  Philip Lijnzaad authored Apr 11, 2001
  
  4c77e7bf
- signature of by_igi_number (for sorting by) changed · 0d5b3650
  Philip Lijnzaad authored Apr 11, 2001
  
  0d5b3650
- Changed some tests and dumps to work with the new DBEntry shema. · 60d3e5b0
  Emmanuel Mongin authored Apr 11, 2001
  
  60d3e5b0
- Added display_id into Xref table · 2a74d6e2
  Emmanuel Mongin authored Apr 11, 2001
  
  2a74d6e2
- Change quite a lot of stuff to try to comply with the new DBentry schema. Also... · ffb686da
  Emmanuel Mongin authored Apr 11, 2001
```
Change quite a lot of stuff to try to comply with the new DBentry schema. Also added new methods in DBEntry (display_id) and in DBEntryAdaptor (few methods to get geneids, ... out with a DBEntry).

E.
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  ffb686da
- Various fixes to deal with shiny new UTRs on predicted genes · 6a386d38
  Val Curwen authored Apr 11, 2001
  
  6a386d38
10 Apr, 2001 9 commits
- *** empty log message *** · 4582c5bc
  Philip Lijnzaad authored Apr 10, 2001
  
  4582c5bc
- fixed sorting (I hope) · 151107f2
  Philip Lijnzaad authored Apr 10, 2001
  
  151107f2
- replaced all transcripts with genes; makes it immune to (and silent about) · 3eed9f4b
  Philip Lijnzaad authored Apr 10, 2001
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'disjoint transcripts' (where several transcripts of a gene don't share
exons)
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  3eed9f4b
- full merge only · 138eccee
  Philip Lijnzaad authored Apr 10, 2001
  
  138eccee
- now full merge only · 4ddf0bbd
  Philip Lijnzaad authored Apr 10, 2001
  
  4ddf0bbd
- more or less up to date with manual incantations · 6a4bea98
  Philip Lijnzaad authored Apr 10, 2001
  
  6a4bea98
- print native_to_igi and vice versa now only print the ones that are in in · 6d6cdeff
  Philip Lijnzaad authored Apr 10, 2001
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cluser_n clusters (ie. only the ones that end up in final)
```
  6d6cdeff
- *** empty log message *** · 92bd3e99
  Philip Lijnzaad authored Apr 10, 2001
  
  92bd3e99
- SNPs method working :) · d49a911a
  Emmanuel Mongin authored Apr 10, 2001
```
E.
```
  d49a911a
09 Apr, 2001 8 commits
- Now tests should work · 306d92b7
  Emmanuel Mongin authored Apr 09, 2001
  
  306d92b7
- On the way to use SNPs in the right way · e2417949
  Emmanuel Mongin authored Apr 09, 2001
  
  e2417949
- peptide dumping · 34c9150f
  Philip Lijnzaad authored Apr 09, 2001
  
  34c9150f
- *** empty log message *** · de729d4c
  Philip Lijnzaad authored Apr 09, 2001
  
  de729d4c
- *** empty log message *** · a8ce5f25
  Philip Lijnzaad authored Apr 09, 2001
  
  a8ce5f25
- warning · 285e84d7
  Philip Lijnzaad authored Apr 09, 2001
  
  285e84d7
- comments · 61b3d093
  Philip Lijnzaad authored Apr 09, 2001
  
  61b3d093
- Now it should work... · 694f6301
  Emmanuel Mongin authored Apr 09, 2001
  
  694f6301
08 Apr, 2001 2 commits
- Some modifications on the scripts which run the · 74ecb4fb
  Emmanuel Mongin authored Apr 08, 2001
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protein annotation.
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  74ecb4fb
- Mapping going on, many changes done... · 58fc4a4b
  Emmanuel Mongin authored Apr 08, 2001
  
  58fc4a4b
07 Apr, 2001 3 commits
- Mapping getting bigger and bigger, added a script which · 7671f083
  Emmanuel Mongin authored Apr 07, 2001
```
prepare the data for scop mapping.

E.
```
  7671f083
- Added a small script needed in the mapping process · 123a2a50
  Emmanuel Mongin authored Apr 07, 2001
  
  123a2a50
- added function to fetch chr length from a vc via the karyotype DB adaptor · 3656484b
  Web Admin authored Apr 07, 2001
  
  3656484b