Commits · 0f9ae074db437d2c838a628993b4234b96b0a552 · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Feb 05, 2023.

13 Jul, 2004 1 commit
- addeded feature strand attribute on SliceAdaptor · 0f9ae074
  Web Admin authored Jul 13, 2004
  
  0f9ae074
24 Jun, 2004 1 commit
- bug fix: slice of lowest ambiguous seq_region was returned instead of highest · 44b266d9
  Graham McVicker authored Jun 24, 2004
  
  44b266d9
15 Jun, 2004 1 commit
- allow end to be one less than start so that we can handle insertions · 9d471c43
  Graham McVicker authored Jun 15, 2004
  
  9d471c43
24 May, 2004 1 commit
- applied patch (from March!) from David Craigon to allow fetch_by_name to work... · c6934d05
  Graham McVicker authored May 24, 2004
```
applied patch (from March!) from David Craigon to allow fetch_by_name to work w/o start/end/strand values
```
  c6934d05
21 Apr, 2004 1 commit
- Error message was not interpolated, but should have been. · e94c2320
  Graham McVicker authored Apr 21, 2004
  
  e94c2320
31 Mar, 2004 1 commit
- Made global seq_region cache non-global. Global cache for all dbs + mod_perl... · 87595f05
  Graham McVicker authored Mar 31, 2004
```
Made global seq_region cache non-global.  Global cache for all dbs + mod_perl = very mysterious web bug.
```
  87595f05
30 Mar, 2004 1 commit
- *** empty log message *** · 69e029da
  James Stalker authored Mar 30, 2004
  
  69e029da
22 Mar, 2004 2 commits
- inserted ::SeqRegionCache:: was missing ... · 50d64675
  Arne Stabenau authored Mar 22, 2004
  
  50d64675
- cetralized all seq_region caching · 4a405d74
  Arne Stabenau authored Mar 22, 2004
  
  4a405d74
18 Mar, 2004 1 commit
- more clever caching to fix a speed problem when fetching a lot of non-duplicate slices · fe7dd406
  Graham McVicker authored Mar 18, 2004
  
  fe7dd406
12 Mar, 2004 1 commit
- adaptor should be set on "stored" slices · 62199743
  Graham McVicker authored Mar 12, 2004
  
  62199743
08 Mar, 2004 1 commit
- guess coord system if one is not provided · 919ac2f9
  Graham McVicker authored Mar 08, 2004
  
  919ac2f9
03 Mar, 2004 1 commit
- removed unneeded includes · 0ecc7327
  Graham McVicker authored Mar 03, 2004
  
  0ecc7327
02 Mar, 2004 1 commit
- added to PODs · 7a1249c4
  Graham McVicker authored Mar 02, 2004
  
  7a1249c4
01 Mar, 2004 1 commit
- removed seq_region_attrib functions now present on AttributeAdaptor instead · 7e646b02
  Graham McVicker authored Mar 01, 2004
  
  7e646b02
27 Feb, 2004 3 commits
- use mysql_info to find if insert ignore was successful · 8da6efcb
  Arne Stabenau authored Feb 27, 2004
  
  8da6efcb
- made attrib_type.code case insensitive (uc() where used) · 3fc0e19c
  Arne Stabenau authored Feb 27, 2004
  
  3fc0e19c
- added set_seq_region_attrib · a1bc05c7
  Arne Stabenau authored Feb 27, 2004
  
  a1bc05c7
26 Feb, 2004 1 commit
- patched project to give back ProjectionSegments · 5f3c8109
  Arne Stabenau authored Feb 26, 2004
  
  5f3c8109
25 Feb, 2004 1 commit
- fixed some deprecated b/w compatibility methods which were broken due to... · b6ec8723
  Graham McVicker authored Feb 25, 2004
```
fixed some deprecated b/w compatibility methods which were broken due to changed toplevel definition
```
  b6ec8723
24 Feb, 2004 1 commit

fetch_all now takes two DIFFERENT arguments. size and overlap have now been... · 50dde046

Ian Longden authored Feb 24, 2004

fetch_all now takes two DIFFERENT arguments. size and overlap have now been removed and replaced with include_non_reference and include_duplicates. SEE Urils/Slice for info on spliting slices

50dde046

17 Feb, 2004 1 commit
- added some more sanity checking to SliceAdaptor::fetch_by_region - cannot... · 30605880
  Graham McVicker authored Feb 17, 2004
```
added some more sanity checking to SliceAdaptor::fetch_by_region - cannot create slice on non-existant or toplevel CoordSystem
```
  30605880
16 Feb, 2004 1 commit
- add additional calls · debc7721
  Web Admin authored Feb 16, 2004
  
  debc7721
12 Feb, 2004 1 commit
- SliceAdaptor::fetch_all now knows about special toplevel coord system · b5f973cd
  Graham McVicker authored Feb 12, 2004
  
  b5f973cd
11 Feb, 2004 1 commit
- modifications so that toplevel is now a pseudo coordinate system representing... · f4036606
  Graham McVicker authored Feb 11, 2004
```
modifications so that toplevel is now a pseudo coordinate system representing the highest real coordinate system in a given region
```
  f4036606
09 Feb, 2004 1 commit
- prepare to use dna_db · 3dad467e
  Arne Stabenau authored Feb 09, 2004
  
  3dad467e
21 Jan, 2004 1 commit

· 03dc7d28

Laura Clarke authored Jan 21, 2004

made sure seqname was maintained in alignfeatures and corrected an error message in SliceAdaptor

03dc7d28

16 Jan, 2004 1 commit
- corrected arithmetic error in fetch_all pointed out by vivek · fdb511c8
  Graham McVicker authored Jan 16, 2004
  
  fdb511c8
14 Jan, 2004 2 commits
- perform fuzzy matching of seq_region versions if no exact matching seq_region is found · 47ff4b54
  Graham McVicker authored Jan 14, 2004
  
  47ff4b54
- made some caches larger, and made caching in fetch_all more intelligent · a6b0996d
  Graham McVicker authored Jan 14, 2004
  
  a6b0996d
13 Jan, 2004 2 commits
- Changes so seq_region_length is set when creating slices · 71d0bfd5
  Graham McVicker authored Jan 13, 2004
  
  71d0bfd5
- add some calc stuff · 9d3d3eaa
  Web Admin authored Jan 13, 2004
  
  9d3d3eaa
09 Jan, 2004 1 commit
- Merged in the new-seqstore into HEAD version · fc6ced68
  Arne Stabenau authored Jan 09, 2004
  
  fc6ced68
15 Dec, 2003 1 commit
- Added %age context on Gene based slices, tweaks to stable id fetches, and white space removal · 893438b2
  Web Admin authored Dec 15, 2003
  
  893438b2
24 Sep, 2003 1 commit
- formatting of SQL · 9a1dceca
  Web Admin authored Sep 24, 2003
  
  9a1dceca
14 Apr, 2003 1 commit
- whitespace change · 9acb2f1e
  Colin Kingswood authored Apr 14, 2003
  
  9acb2f1e
08 Apr, 2003 1 commit
- made error message more useful · 02dbdff3
  Ewan Birney authored Apr 08, 2003
  
  02dbdff3
24 Mar, 2003 1 commit
- fix cache and DBentry problems · 4b728760
  Web Admin authored Mar 24, 2003
  
  4b728760
30 Jan, 2003 1 commit
- removed deprecated methods · 809f1d70
  Graham McVicker authored Jan 30, 2003
  
  809f1d70
28 Jan, 2003 1 commit
- fixing busted calls · fff326c5
  Web Admin authored Jan 28, 2003
  
  fff326c5