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    • Andreas Kusalananda Kähäri's avatar
    • Andreas Kusalananda Kähäri's avatar
      Add method equals(): · eb84e13d
      Andreas Kusalananda Kähäri authored
        Arg [1]       : Bio::EnsEMBL::Gene gene
        Example       : if ($geneA->equals($geneB)) { ... }
        Description   : Compares two genes for equality.
                        The test for eqality goes through the following list
                        and terminates at the first true match:
      
                        1. If Bio::EnsEMBL::Feature::equals() returns false,
                           then the genes are *not* equal.
                        2. If the biotypes differ, then the genes are *not*
                           equal.
                        3. If both genes have stable IDs: if these are the
                           same, the genes are equal, otherwise not.
                        4. If both genes have the same number of transcripts
                           and if these are (when compared pair-wise sorted by
                           start-position and length) the same, then they are
                           equal, otherwise not.
      
        Return type   : Boolean (0, 1)
      
        Exceptions    : Thrown if a non-gene is passed as the argument.
      eb84e13d
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    • Andreas Kusalananda Kähäri's avatar
      New method load() for Exon, Gene, Transcript, and Translation. · a2456cf1
      Andreas Kusalananda Kähäri authored
      =head2 load
      
        Arg [1]       : Boolean $load_xrefs
                        Load (or don't load) xrefs.  Default is to load xrefs.
        Example       : $translation->load();
        Description   : The Ensembl API makes extensive use of
                        lazy-loading.  Under some circumstances (e.g.,
                        when copying genes between databases), all data of
                        an object needs to be fully loaded.  This method
                        loads the parts of the object that are usually
                        lazy-loaded.
        Returns       : Nothing.
      
      =cut
      a2456cf1
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