Commits · 23942d6b6555c838c72bb77aa4c93e225919663d · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Feb 08, 2023.

16 May, 2003 1 commit
- allow prediction transcripts to be computed in slice coords and transformed to... · 23942d6b
  Graham McVicker authored May 16, 2003
```
allow prediction transcripts to be computed in slice coords and transformed to raw contig coords - untested
```
  23942d6b
15 May, 2003 1 commit
- Made it much more robust · 48bd635f
  Abel Ureta-Vidal authored May 15, 2003
  
  48bd635f
13 May, 2003 1 commit
- modules to run the archive, not finished, not compiling · c070ea28
  Arne Stabenau authored May 13, 2003
  
  c070ea28
09 May, 2003 3 commits
- fixed line 177 from $sth to $synonym_check_sth · eafbcea4
  Kerstin Howe authored May 09, 2003
  
  eafbcea4
- added zebrafish specific options · 9ac1f3be
  Kerstin Howe authored May 09, 2003
  
  9ac1f3be
- changed/added zebrafish specific options · f7196b27
  Kerstin Howe authored May 09, 2003
  
  f7196b27
07 May, 2003 2 commits
- updated get_all_compara_DnaAlignFeatures method that have now 2 arguments as... · 6b8ec0ef
  Abel Ureta-Vidal authored May 07, 2003
```
updated get_all_compara_DnaAlignFeatures method that have now 2 arguments as consequence of compara schema change when storing Dna alignments
```
  6b8ec0ef
- short script to get predicted sequence being potentially transposons or lying... · 19531a98
  Emmanuel Mongin authored May 07, 2003
```
short script to get predicted sequence being potentially transposons or lying on bacterial contaminants
```
  19531a98
06 May, 2003 1 commit
- Script to do easy copy of mysql dbs over server. Very well needed during the release coordination · d461a014
  Abel Ureta-Vidal authored May 06, 2003
  
  d461a014
02 May, 2003 3 commits
- script to convert old-style xrefs to new · e94e2792
  Graham McVicker authored May 02, 2003
  
  e94e2792
- scripts and instructions for external_db/additional xref loading · a5425590
  Graham McVicker authored May 02, 2003
  
  a5425590
- white space and warns · 60c4aeab
  Web Admin authored May 02, 2003
  
  60c4aeab
01 May, 2003 5 commits
- functional new method for making empty object · 070cc30a
  James Gilbert authored May 01, 2003
  
  070cc30a
- Speed improvement on Gene fetching · 66443ee7
  Arne Stabenau authored May 01, 2003
  
  66443ee7
- unused · d6b5b866
  Simon Potter authored May 01, 2003
  
  d6b5b866
- made ecs2 aware · 3e5b49ab
  Simon Potter authored May 01, 2003
```
added -r cluster option
```
  3e5b49ab
- old · 3010012a
  Simon Potter authored May 01, 2003
  
  3010012a
30 Apr, 2003 2 commits
- added tables stable_id_event and mapping_session · ada95c1d
  Graham McVicker authored Apr 30, 2003
  
  ada95c1d
- removed contig_start from some indices · b3a80e46
  Simon Potter authored Apr 30, 2003
  
  b3a80e46
28 Apr, 2003 1 commit
- fixed annoying mixed-case bug in _rearrange method · 0671cbaf
  Graham McVicker authored Apr 28, 2003
  
  0671cbaf
25 Apr, 2003 4 commits
- blast stuff · a24c4e4e
  Web Admin authored Apr 25, 2003
  
  a24c4e4e
- add default values to ctg2geneomic · 440b68cb
  Brian Gibbins authored Apr 25, 2003
  
  440b68cb
- Loaded the EnsemblHSP module · 360d2b62
  Will Spooner authored Apr 25, 2003
  
  360d2b62
- Forgot to udpate latest version · 518b3102
  Emmanuel Mongin authored Apr 25, 2003
  
  518b3102
24 Apr, 2003 11 commits
- Fixed num bound params · 4037f33a
  Will Spooner authored Apr 24, 2003
  
  4037f33a
- removed debugging cruft · 1e006850
  James Gilbert authored Apr 24, 2003
  
  1e006850
- Do not set $transcript->_translation_id($translation_id) if $translation_id == 0 · 8690e8dc
  James Gilbert authored Apr 24, 2003
  
  8690e8dc
- minor fix to hide method · 87b54125
  Graham McVicker authored Apr 24, 2003
  
  87b54125
- Now ISA BaseAdaptor · 40f488d5
  Will Spooner authored Apr 24, 2003
  
  40f488d5
- pod fix and commented out unimplemented method · 275edf76
  James Gilbert authored Apr 24, 2003
  
  275edf76
- · 66f6f1a5
  Laura Clarke authored Apr 24, 2003
```
test for new fetch_all_names method
```
  66f6f1a5
- · 5aad7dd8
  Laura Clarke authored Apr 24, 2003
```
added a fetch_all_names method
```
  5aad7dd8
- updated Das to return stylesheet as well as data · 64432a87
  Web Admin authored Apr 24, 2003
  
  64432a87
- Added External::BlastAdaptor support · 02250d17
  Will Spooner authored Apr 24, 2003
  
  02250d17
- Module to retrieve blast features serialised in a database · 9f0632ef
  Will Spooner authored Apr 24, 2003
  
  9f0632ef
23 Apr, 2003 1 commit
- get_all_Genes_by_type should take optional logic_name, empty_flag arguments · 3de417e5
  Graham McVicker authored Apr 23, 2003
  
  3de417e5
22 Apr, 2003 3 commits
- fix bug related to fetching QTL features by slice · a8c975b5
  Graham McVicker authored Apr 22, 2003
  
  a8c975b5
- added type PSEUDO to external_db status enum · e03889b5
  Graham McVicker authored Apr 22, 2003
  
  e03889b5
- added wormbase_pseudogene to external_db table · 58f897a5
  Graham McVicker authored Apr 22, 2003
  
  58f897a5
17 Apr, 2003 1 commit
- removed some crufty test methods · 3e1716ad
  Graham McVicker authored Apr 17, 2003
  
  3e1716ad