Commits · 2f13e20daeb4aee757e7cfedb381935351241fed · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Jan 30, 2023.

22 Nov, 2002 4 commits
- Less obfuscated version. · 2f13e20d
  Alistair Rust authored Nov 22, 2002
  
  2f13e20d
- Tests. · 64d70ed4
  Alistair Rust authored Nov 22, 2002
  
  64d70ed4
- Mods to the testing of getter_setter methods. · 82369648
  Alistair Rust authored Nov 22, 2002
  
  82369648
- added 1; at the end of module · 7d3e8ccd
  Abel Ureta-Vidal authored Nov 22, 2002
  
  7d3e8ccd
21 Nov, 2002 12 commits
- Corrected the order of fields outputted by gffstring. · 30bfd015
  Dan T Andrews authored Nov 21, 2002
  
  30bfd015
- removed deprecated methods · e7508ad9
  Arne Stabenau authored Nov 21, 2002
  
  e7508ad9
- nt_contigs as slices supported · 506a9249
  Arne Stabenau authored Nov 21, 2002
  
  506a9249
- Tests. · 38e95bad
  Alistair Rust authored Nov 21, 2002
  
  38e95bad
- More tests. · 585b8af1
  Alistair Rust authored Nov 21, 2002
  
  585b8af1
- · ffbc2898
  Laura Clarke authored Nov 21, 2002
```
typos
```
  ffbc2898
- merge change from branch · 1521709b
  Graham McVicker authored Nov 21, 2002
  
  1521709b
- fix to Slice::get_all_compara_DnaAlignFeatures method · 38299f79
  Graham McVicker authored Nov 21, 2002
  
  38299f79
- · e74d13fe
  Laura Clarke authored Nov 21, 2002
```
added a store method, it compiles but not tested yet
```
  e74d13fe
- more tests, flush_Exons -->flush_Exons · 087c3c9b
  Arne Stabenau authored Nov 21, 2002
  
  087c3c9b
- added supporting feature test · bc3074db
  Arne Stabenau authored Nov 21, 2002
  
  bc3074db
- · 3841d1bd
  Laura Clarke authored Nov 21, 2002
```
decided to put this stuff in pipeline
```
  3841d1bd
20 Nov, 2002 24 commits
- fix to sticky exon supporting feature storing · 69ee1ecc
  Graham McVicker authored Nov 20, 2002
  
  69ee1ecc
- sticky exon handling of supporting features refactored (not tested) · 14e05af1
  Graham McVicker authored Nov 20, 2002
  
  14e05af1
- added a specific option for anopheles to map submitted genes · bfedd36e
  Emmanuel Mongin authored Nov 20, 2002
  
  bfedd36e
- Added more tests. · f9a62b4c
  Alistair Rust authored Nov 20, 2002
  
  f9a62b4c
- renamed script plus gave it some options · d50c2475
  Arne Stabenau authored Nov 20, 2002
  
  d50c2475
- removed debugging blah blah · b0da7f89
  Eduardo Eyras authored Nov 20, 2002
  
  b0da7f89
- Now Sticky Exons get supporting evidence, hurray · 1dd4551e
  Eduardo Eyras authored Nov 20, 2002
  
  1dd4551e
- pmatch update · cbd34016
  Emmanuel Mongin authored Nov 20, 2002
  
  cbd34016
- emptied the conf file · c1ddd0f7
  Emmanuel Mongin authored Nov 20, 2002
  
  c1ddd0f7
- POD updates · bb354969
  Graham McVicker authored Nov 20, 2002
  
  bb354969
- updated maps2db to work with scanwisepep output · 0042af82
  Emmanuel Mongin authored Nov 20, 2002
  
  0042af82
- Change method name to call synonym to avoid warning · 4038ba2e
  Emmanuel Mongin authored Nov 20, 2002
  
  4038ba2e
- removed print · 131febbc
  Graham McVicker authored Nov 20, 2002
  
  131febbc
- added karyotypeBand.t test script · a548de07
  Graham McVicker authored Nov 20, 2002
  
  a548de07
- removed some uneeded 'uses', removed uneeded sleep · 9624802f
  Graham McVicker authored Nov 20, 2002
  
  9624802f
- added container.t test script · db3e88c7
  Graham McVicker authored Nov 20, 2002
  
  db3e88c7
- changed a comma for a semicolon at the end of two lines · 8539013a
  Eduardo Eyras authored Nov 20, 2002
  
  8539013a
- added chromosome.t test script · 135915f2
  Graham McVicker authored Nov 20, 2002
  
  135915f2
- The first few tests.... wip · 5329173c
  Alistair Rust authored Nov 20, 2002
  
  5329173c
- Wrapper around Ewan's scanwisepep may replace pmatch at some point for the... · 623fcec5
  Emmanuel Mongin authored Nov 20, 2002
```
Wrapper around Ewan's scanwisepep may replace pmatch at some point for the known gene mapping but still need some debugging
```
  623fcec5
- some comments · ddf4d985
  Arne Stabenau authored Nov 20, 2002
  
  ddf4d985
- · de480bef
  Laura Clarke authored Nov 20, 2002
```
first set of files for parsing wormbase into ensembl

these mostly work but aren't fully tested

they work in theory but but i am still having problems getting the correct sequence
```
  de480bef
- updated dbConnection.t test script · d21421f3
  Graham McVicker authored Nov 20, 2002
  
  d21421f3
- commented out debugging print · 17f270cd
  Eduardo Eyras authored Nov 20, 2002
  
  17f270cd