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  1. 08 Dec, 2015 1 commit
    • Matthew Laird's avatar
      Jira ENSCORESW-1381 · 34be9763
      Matthew Laird authored
      stable_id_version setter/getter for core object types, sets stable_id with a . delimited version or fetches stable_id with .version concatonated (if version is set)
      34be9763
  2. 02 Dec, 2015 1 commit
    • Matthew Laird's avatar
      Jira ENSCORESW-1381 · a9ac8581
      Matthew Laird authored
      - Added fetch_by_stable_id_version to TranslationAdaptor for consistency
      - Related tests for new function
      a9ac8581
  3. 01 Dec, 2015 2 commits
    • Matthew Laird's avatar
      Jira ENSCORESW-1381 · 09abe4f6
      Matthew Laird authored
      - Ensire the "version" if tested for is digits only
      09abe4f6
    • Matthew Laird's avatar
      Jira ENSCORESW-1381 · 61093b6e
      Matthew Laird authored
      - Added support in the Registry for version ids (\.\d+) support in stable_id when determining idenfitier type
      - Added support to the ArchiveStableIdAdaptor for versions in stable_ids on object creation
      - Test cases for identifiers with and without versions when doing lookups
      61093b6e
  4. 30 Nov, 2015 1 commit
    • Matthew Laird's avatar
      Jira ENSCORESW-1381 · c5d6508b
      Matthew Laird authored
      - handlers in Exon, Gene, Operon, OperonTranscript and Transcript Adaptors for a versions fetch_by_stable_id call and new handler for fetch_by_stable_id_version
      - Translation is handled implicitly through calls to Transcript
      - Test cases for the new handlers and functionality
      c5d6508b
  5. 25 Nov, 2015 1 commit
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  12. 28 Oct, 2015 1 commit
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  20. 09 Sep, 2015 3 commits
  21. 08 Sep, 2015 1 commit
  22. 04 Sep, 2015 3 commits
  23. 03 Sep, 2015 1 commit
  24. 01 Sep, 2015 1 commit
    • Amonida Zadissa's avatar
      Update GTFSerializer.pm · 3ecee389
      Amonida Zadissa authored
      Skipping trans-splicing transcripts and the gene if it's a single transcript gene with optimisation call.
      3ecee389
  25. 20 Aug, 2015 1 commit
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  30. 04 Aug, 2015 1 commit