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    • Andreas Kusalananda Kähäri's avatar
      Fixed POD. · 5f89f8df
      Andreas Kusalananda Kähäri authored
      Fixed comment.
      5f89f8df
    • Andreas Kusalananda Kähäri's avatar
      Added new methods: · 6520767f
      Andreas Kusalananda Kähäri authored
          $exon->cdna_start($transcript);
              # Returns the start position of the exon in cDNA coordinates.
      
          $exon->cdna_end($transcript);
              # Returns the end position of the exon in cDNA coordinates.
      
      
          $exon->cdna_coding_start($transcript);
              # Returns the start position of the coding region of the exon
              # in cDNA coordinates.  Returns undef if the whole exon is
              # non-coding.
      
          $exon->cdna_coding_end($transcript);
              # Returns the end position of the coding region of the exon
              # in cDNA coordinates.  Returns undef if the whole exon is
              # non-coding.
      
      
          $exon->coding_region_start($transcript);
              # Returns the start position of the coding region of the exon in
              # genomic coordinates on the forward strand.  Returns undef if
              # the whole exon is non-coding.
      
          $exon->coding_region_end($transcript);
              # Returns the end position of the coding region of the exon in
              # genomic coordinates on the forward strand.  Returns undef if
              # the whole exon is non-coding.
      
      
      Since an exon may be part of one or more transcripts, the relevant
      transcript must be given as argument ot these methods.
      6520767f
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