This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git.
Pull mirroring updated .
- 04 May, 2010 4 commits
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Andy Yates authored
Regular expressions expanded to allow for 0-9 in the second portion of a database name. Original patch only allowed this in the first scan of names. Passed by Andreas
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
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- 23 Apr, 2010 1 commit
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Simon White authored
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- 22 Apr, 2010 4 commits
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Simon White authored
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Andreas Kusalananda Kähäri authored
We know that fetch_all_by_Transcript() (on a TranslationAdaptor) will return a list of translations, where the first one will always be the canonical translation (if there is one). Make use of this fact to make the routine slightly quicker.
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Andreas Kusalananda Kähäri authored
* Use fetch_all_by_Transcript() rather than translation() on the transcript to get the canonical translation (and any alternative translations). * ... then store the translation and any alternative translations. Solves a problem stopping genebuilders from copying genes from one database to another.
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Andreas Kusalananda Kähäri authored
* Correct documentation. * Use fetch_by_Transcript() to get canonical translation. * Modify SQL not to get canonical translation.
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- 21 Apr, 2010 1 commit
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Andreas Kusalananda Kähäri authored
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- 20 Apr, 2010 4 commits
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Gautier Koscielny authored
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
get_all_alternative_translations().
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Andreas Kusalananda Kähäri authored
* In the _list_dbIDs() method: Wrap the execute() in an eval() and throw() if it fails. * In the generic_fetch() method: For multi-species databases, make sure we're using the correct SQL table aliases for the seq_region and coord_system tables..
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- 19 Apr, 2010 1 commit
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Susan Fairley authored
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- 16 Apr, 2010 2 commits
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Andreas Kusalananda Kähäri authored
perl rather than relying on the script to be executable.
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Andreas Kusalananda Kähäri authored
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- 15 Apr, 2010 3 commits
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
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- 14 Apr, 2010 6 commits
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Andreas Kusalananda Kähäri authored
like "aspergillus_fumigatusa1163_core_5_58_1a" (containing integers as part of the second part of their names).
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Thibaut Hourlier authored
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Pontus Larsson authored
Added check to make sure that only the causative allele is evaluated when a variation has more than two alleles
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Simon White authored
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Pontus Larsson authored
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Simon White authored
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- 13 Apr, 2010 1 commit
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Susan Fairley authored
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- 12 Apr, 2010 1 commit
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Amonida Zadissa authored
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- 08 Apr, 2010 1 commit
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Pontus Larsson authored
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- 07 Apr, 2010 2 commits
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Ian Longden authored
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Pontus Larsson authored
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- 06 Apr, 2010 8 commits
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
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Gautier Koscielny authored
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Pontus Larsson authored
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Pontus Larsson authored
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- 01 Apr, 2010 1 commit
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Andreas Kusalananda Kähäri authored
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