Commits · 5e7ab1473f765ae7d5a6d47f643044c9f94a2188 · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Jan 31, 2023.

20 Mar, 2003 2 commits
- Added "can" to Container.pm in a similar manner · 5e7ab147
  James Gilbert authored Mar 20, 2003
```
to the existing "isa", and added a friendly throw to
AUTOLOAD if the method does not exist on the object.
```
  5e7ab147
- fixed buglets... · dfc19b17
  Web Admin authored Mar 20, 2003
  
  dfc19b17
19 Mar, 2003 9 commits
- added 'DROS_ORTH','Vega_transcript','Vega_gene','Vega_translation' to · c43d3cbb
  Damian Keefe authored Mar 19, 2003
```
external_db db_name enum
```
  c43d3cbb
- removed misleading and very out of date (c. 1999) README · 9a42839a
  Graham McVicker authored Mar 19, 2003
  
  9a42839a
- removed some cruft · ecfc56a2
  Graham McVicker authored Mar 19, 2003
  
  ecfc56a2
- removed cruft · f83fd747
  Graham McVicker authored Mar 19, 2003
  
  f83fd747
- removed crufty method to_FTHelper · 4f38d550
  Graham McVicker authored Mar 19, 2003
  
  4f38d550
- make feature caching case insensitive (i.e. slice on chr 'X' or 'x' is same slice) · cf9ddc4f
  Graham McVicker authored Mar 19, 2003
  
  cf9ddc4f
- Fix broken fetch_by_dbID method · 5b352f75
  Graham McVicker authored Mar 19, 2003
  
  5b352f75
- make ids in mapper case insensitive · 1d8d96ba
  Graham McVicker authored Mar 19, 2003
  
  1d8d96ba
- converter for genscan result; · 11dafb81
  juguang authored Mar 19, 2003
```
more doc for converter factory to enumerate all instances so far.
```
  11dafb81
18 Mar, 2003 5 commits
- Added commandline parameters · 834206f1
  Arne Stabenau authored Mar 18, 2003
  
  834206f1
- check length when retrieving exon peptide - some transcripts have incomplete last codons · 30f49774
  Graham McVicker authored Mar 18, 2003
  
  30f49774
- describe to desc · c0a7f8af
  Arne Stabenau authored Mar 18, 2003
  
  c0a7f8af
- perform case insensitive caching of analysis objects · 1b5c20a3
  Graham McVicker authored Mar 18, 2003
  
  1b5c20a3
- More docs and fix the converter leak. · 84167473
  juguang authored Mar 18, 2003
  
  84167473
17 Mar, 2003 5 commits
- *** empty log message *** · dc972725
  Emmanuel Mongin authored Mar 17, 2003
  
  dc972725
- change to SQL in _type_by_external_id to add xref · 6cb5a257
  Brian Gibbins authored Mar 17, 2003
  
  6cb5a257
- fix undef synonym error · 9fcef4be
  Brian Gibbins authored Mar 17, 2003
  
  9fcef4be
- fix hash key values for db_links · c93eb96e
  Brian Gibbins authored Mar 17, 2003
  
  c93eb96e
- chnaged new_fast · 4810c081
  Brian Gibbins authored Mar 17, 2003
  
  4810c081
15 Mar, 2003 2 commits
- small fixes · 86a23953
  Shawn Hoon authored Mar 15, 2003
  
  86a23953
- proper use of rearrange, deref contig if arra ref · 026bf6c0
  Shawn Hoon authored Mar 15, 2003
  
  026bf6c0
14 Mar, 2003 7 commits
- avoid warning · 721fa1c3
  Simon Potter authored Mar 14, 2003
  
  721fa1c3
- · ca018736
  Laura Clarke authored Mar 14, 2003
```
changed some if defined to ifs given 0's and null string shouldn't be evaluated as true in those
contexts
```
  ca018736
- added qtl tables · 5457e0c1
  Graham McVicker authored Mar 14, 2003
  
  5457e0c1
- fixed a bit of Vega and ESTGene dumping logic · ba1a3932
  Graham McVicker authored Mar 14, 2003
  
  ba1a3932
- added line to avoid a warning · 98a18ba6
  Simon Potter authored Mar 14, 2003
  
  98a18ba6
- added new probe name to external_db enum · c6dedc5c
  Damian Keefe authored Mar 14, 2003
  
  c6dedc5c
- converting from Bio::Pipeline::Analysis to EnsEMBL Analysis · e98acad6
  juguang authored Mar 14, 2003
  
  e98acad6
13 Mar, 2003 7 commits
- updated some pods · 044dbe48
  Graham McVicker authored Mar 13, 2003
  
  044dbe48
- *** empty log message *** · 135b14ea
  Emmanuel Mongin authored Mar 13, 2003
  
  135b14ea
- added remove() and update() · ba34bb76
  Simon Potter authored Mar 13, 2003
  
  ba34bb76
- added support for optional dumping of estgene/vega genes · fb740ac7
  Graham McVicker authored Mar 13, 2003
  
  fb740ac7
- Qtl and QtlFeature Adaptor get functions added · 90df228e
  Arne Stabenau authored Mar 13, 2003
  
  90df228e
- flush exons didnt flush the cdna_coding_start/end cache · b658446a
  Arne Stabenau authored Mar 13, 2003
  
  b658446a
- converter from GenericHSP to BaseAlignFeature's submodules, for blast report · 048b9f36
  juguang authored Mar 13, 2003
```
GenericHPS::algorithm tells what program of blastall is used, and in response of this, the code try to find the specific alignment feature in EnsEMBL.
```
  048b9f36
12 Mar, 2003 3 commits
- Slice can retrieve qtl features · 1ec434ad
  Arne Stabenau authored Mar 12, 2003
  
  1ec434ad
- API for qtls · 4bf96eea
  Arne Stabenau authored Mar 12, 2003
  
  4bf96eea
- New test and test data for qtls · f0c176db
  Arne Stabenau authored Mar 12, 2003
  
  f0c176db