Commits · 75fe14614035c9c280c0eb74d44935dab1b8ac38 · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Feb 06, 2023.

07 Nov, 2001 1 commit

Changed var name for chromosome in Karyotype adaptor, which caused perl syntax... · 75fe1461

Elia Stupka authored Nov 07, 2001

Changed var name for chromosome in Karyotype adaptor, which caused perl syntax error, somebody have a look, strange nobody picked it up? the variable does not get used anyway...

75fe1461

06 Nov, 2001 15 commits
- contig fetch by internalid (needed for genscan peptide fetch · 938a3179
  Michele Clamp authored Nov 06, 2001
  
  938a3179
- get genscan peptides written to use new ids · 41066cb5
  Michele Clamp authored Nov 06, 2001
  
  41066cb5
- genscan fsetids reset · 1eba5a5c
  Michele Clamp authored Nov 06, 2001
  
  1eba5a5c
- Cloneset call add · 2d3a81c5
  Web Admin authored Nov 06, 2001
  
  2d3a81c5
- Bad Michele. Fixed dumb bug. · 98b20bb5
  Michele Clamp authored Nov 06, 2001
  
  98b20bb5
- And the same hackalicious change for duplicate genscans · 666aec73
  Michele Clamp authored Nov 06, 2001
  
  666aec73
- Hackalicious change to strip out duplicate genscsans · d564bc95
  Michele Clamp authored Nov 06, 2001
  
  d564bc95
- added a get_all_SNPFeature method which tunnels through to LiteAdaptor. · 3c5d930f
  Arne Stabenau authored Nov 06, 2001
  
  3c5d930f
- converted to vc coords · 05b96ce3
  Arek Icrapzych authored Nov 06, 2001
  
  05b96ce3
- · 01202565
  Arek Icrapzych authored Nov 06, 2001
```
corrected typo in column name
```
  01202565
- dbname prefix · 23af247e
  Arek Icrapzych authored Nov 06, 2001
  
  23af247e
- commented out eprof · b40387de
  Arek Icrapzych authored Nov 06, 2001
  
  b40387de
- added new snp fetching call · 3ea96e4b
  Arek Icrapzych authored Nov 06, 2001
  
  3ea96e4b
- modified sql to work with index. · 9b4e1175
  Arne Stabenau authored Nov 06, 2001
  
  9b4e1175
- Corrected two typos in the POD. · 3cd55c59
  David Barnwell authored Nov 06, 2001
  
  3cd55c59
05 Nov, 2001 1 commit
- made it compile. · 77f65601
  Arne Stabenau authored Nov 05, 2001
  
  77f65601
02 Nov, 2001 3 commits
- Added missing gene type query line in get_all_Genes_exononly · b128d584
  Stephen Searle authored Nov 02, 2001
  
  b128d584
- added eval statement · 88a8799d
  Arek Icrapzych authored Nov 02, 2001
  
  88a8799d
- apply_mappings takes the text output from mappng.pl and generates · b5b2067d
  Arne Stabenau authored Nov 02, 2001
```
the xxx_stable_id files for upload. Databases are hardcoded in the
script. Its a one-of (hopefully) anyway.
```
  b5b2067d
01 Nov, 2001 8 commits
- works on the new schema · 40b83950
  Philip Lijnzaad authored Nov 01, 2001
  
  40b83950
- lowercase ???? · c6e99e53
  Philip Lijnzaad authored Nov 01, 2001
  
  c6e99e53
- adjuested for the 120 schema · 2ede5dcb
  Philip Lijnzaad authored Nov 01, 2001
  
  2ede5dcb
- Mainly white space - but also a working fix for the sticky exon bug - it now... · 96cafe86
  Web Admin authored Nov 01, 2001
```
Mainly white space - but also a working fix for the sticky exon bug - it now returns the sticky parts of exons...
```
  96cafe86
- Fixed repeats globbing bug · 1ef7360b
  Web Admin authored Nov 01, 2001
  
  1ef7360b
- Added functions to search for Bands without Karyotype · 83366207
  Web Admin authored Nov 01, 2001
  
  83366207
- working version of the script · 106a3f27
  Arek Icrapzych authored Nov 01, 2001
  
  106a3f27
- Added call to base class constructor · ba5c9e80
  Stephen Searle authored Nov 01, 2001
  
  ba5c9e80
31 Oct, 2001 5 commits
- Added a method get_all_blastpFeatures · 836af2c4
  Emmanuel Mongin authored Oct 31, 2001
  
  836af2c4
- Added a bit of doc · 39588df5
  Emmanuel Mongin authored Oct 31, 2001
  
  39588df5
- take download from jim kents db and upload it into maps database. · 31a0a3e4
  Arne Stabenau authored Oct 31, 2001
  
  31a0a3e4
- get_all_unigene_features is used only for sage mapping. it relies on a hacked... · 2ba02985
  Lukasz Huminiecki authored Oct 31, 2001
```
get_all_unigene_features is used only for sage mapping. it relies on a hacked unigene_feature table which is a sunset of feature table prepared only for mapping. I addedd "where f.score > 300" because we we need it to work faster. consult Lukasz or Arek before removing this method
```
  2ba02985
- Pffu hadn't commited this script for 7 months... you even don't want to know... · 2311a2e6
  Emmanuel Mongin authored Oct 31, 2001
```
Pffu hadn't commited this script for 7 months... you even don't want to know where I've foind teh right version.
```
  2311a2e6
30 Oct, 2001 7 commits
- removed join to stable ids in virtual trans · aacb9761
  Arek Icrapzych authored Oct 30, 2001
  
  aacb9761
- VirtualTranscripts groups now by internal_id · e3e2b3f5
  Arek Icrapzych authored Oct 30, 2001
  
  e3e2b3f5
- stable id fixes · 3ef81942
  Arek Icrapzych authored Oct 30, 2001
  
  3ef81942
- superfluous use Carp · 459823b4
  Philip Lijnzaad authored Oct 30, 2001
  
  459823b4
- added stable id setting · a1f37601
  Arek Icrapzych authored Oct 30, 2001
  
  a1f37601
- stable id/db id mapping now goes to txt file · 81a85660
  Arek Icrapzych authored Oct 30, 2001
  
  81a85660
- Made stable_id settable. Doesnt store in the database yet. · 5584dc19
  Arne Stabenau authored Oct 30, 2001
  
  5584dc19