Commits · 7e646b02bcf5d145658f3731b17390abffa48128 · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Jan 31, 2023.

01 Mar, 2004 1 commit
- removed seq_region_attrib functions now present on AttributeAdaptor instead · 7e646b02
  Graham McVicker authored Mar 01, 2004
  
  7e646b02
27 Feb, 2004 3 commits
- use mysql_info to find if insert ignore was successful · 8da6efcb
  Arne Stabenau authored Feb 27, 2004
  
  8da6efcb
- made attrib_type.code case insensitive (uc() where used) · 3fc0e19c
  Arne Stabenau authored Feb 27, 2004
  
  3fc0e19c
- added set_seq_region_attrib · a1bc05c7
  Arne Stabenau authored Feb 27, 2004
  
  a1bc05c7
26 Feb, 2004 1 commit
- patched project to give back ProjectionSegments · 5f3c8109
  Arne Stabenau authored Feb 26, 2004
  
  5f3c8109
25 Feb, 2004 1 commit
- fixed some deprecated b/w compatibility methods which were broken due to... · b6ec8723
  Graham McVicker authored Feb 25, 2004
```
fixed some deprecated b/w compatibility methods which were broken due to changed toplevel definition
```
  b6ec8723
24 Feb, 2004 1 commit

fetch_all now takes two DIFFERENT arguments. size and overlap have now been... · 50dde046

Ian Longden authored Feb 24, 2004

fetch_all now takes two DIFFERENT arguments. size and overlap have now been removed and replaced with include_non_reference and include_duplicates. SEE Urils/Slice for info on spliting slices

50dde046

17 Feb, 2004 1 commit
- added some more sanity checking to SliceAdaptor::fetch_by_region - cannot... · 30605880
  Graham McVicker authored Feb 17, 2004
```
added some more sanity checking to SliceAdaptor::fetch_by_region - cannot create slice on non-existant or toplevel CoordSystem
```
  30605880
16 Feb, 2004 1 commit
- add additional calls · debc7721
  Web Admin authored Feb 16, 2004
  
  debc7721
12 Feb, 2004 1 commit
- SliceAdaptor::fetch_all now knows about special toplevel coord system · b5f973cd
  Graham McVicker authored Feb 12, 2004
  
  b5f973cd
11 Feb, 2004 1 commit
- modifications so that toplevel is now a pseudo coordinate system representing... · f4036606
  Graham McVicker authored Feb 11, 2004
```
modifications so that toplevel is now a pseudo coordinate system representing the highest real coordinate system in a given region
```
  f4036606
09 Feb, 2004 1 commit
- prepare to use dna_db · 3dad467e
  Arne Stabenau authored Feb 09, 2004
  
  3dad467e
21 Jan, 2004 1 commit

· 03dc7d28

Laura Clarke authored Jan 21, 2004

made sure seqname was maintained in alignfeatures and corrected an error message in SliceAdaptor

03dc7d28

16 Jan, 2004 1 commit
- corrected arithmetic error in fetch_all pointed out by vivek · fdb511c8
  Graham McVicker authored Jan 16, 2004
  
  fdb511c8
14 Jan, 2004 2 commits
- perform fuzzy matching of seq_region versions if no exact matching seq_region is found · 47ff4b54
  Graham McVicker authored Jan 14, 2004
  
  47ff4b54
- made some caches larger, and made caching in fetch_all more intelligent · a6b0996d
  Graham McVicker authored Jan 14, 2004
  
  a6b0996d
13 Jan, 2004 2 commits
- Changes so seq_region_length is set when creating slices · 71d0bfd5
  Graham McVicker authored Jan 13, 2004
  
  71d0bfd5
- add some calc stuff · 9d3d3eaa
  Web Admin authored Jan 13, 2004
  
  9d3d3eaa
09 Jan, 2004 1 commit
- Merged in the new-seqstore into HEAD version · fc6ced68
  Arne Stabenau authored Jan 09, 2004
  
  fc6ced68
15 Dec, 2003 1 commit
- Added %age context on Gene based slices, tweaks to stable id fetches, and white space removal · 893438b2
  Web Admin authored Dec 15, 2003
  
  893438b2
24 Sep, 2003 1 commit
- formatting of SQL · 9a1dceca
  Web Admin authored Sep 24, 2003
  
  9a1dceca
14 Apr, 2003 1 commit
- whitespace change · 9acb2f1e
  Colin Kingswood authored Apr 14, 2003
  
  9acb2f1e
08 Apr, 2003 1 commit
- made error message more useful · 02dbdff3
  Ewan Birney authored Apr 08, 2003
  
  02dbdff3
24 Mar, 2003 1 commit
- fix cache and DBentry problems · 4b728760
  Web Admin authored Mar 24, 2003
  
  4b728760
30 Jan, 2003 1 commit
- removed deprecated methods · 809f1d70
  Graham McVicker authored Jan 30, 2003
  
  809f1d70
28 Jan, 2003 1 commit
- fixing busted calls · fff326c5
  Web Admin authored Jan 28, 2003
  
  fff326c5
16 Jan, 2003 1 commit
- Fixed code to return slice only if valid · a41846a9
  Web Admin authored Jan 16, 2003
  
  a41846a9
06 Dec, 2002 1 commit
- adjusted incorrect POD · 9c0141d9
  Graham McVicker authored Dec 06, 2002
  
  9c0141d9
05 Dec, 2002 1 commit
- set up the adaptor when creating a slice in the method fetch_by_supercontig_name · d214fb8d
  Emmanuel Mongin authored Dec 05, 2002
  
  d214fb8d
04 Dec, 2002 1 commit
- moving from branch · a94df20c
  Web Admin authored Dec 04, 2002
  
  a94df20c
22 Nov, 2002 1 commit
- added 1; at the end of module · 7d3e8ccd
  Abel Ureta-Vidal authored Nov 22, 2002
  
  7d3e8ccd
21 Nov, 2002 1 commit
- nt_contigs as slices supported · 506a9249
  Arne Stabenau authored Nov 21, 2002
  
  506a9249
19 Nov, 2002 1 commit
- Updated PODs · a2f48ed7
  Graham McVicker authored Nov 19, 2002
  
  a2f48ed7
13 Nov, 2002 1 commit
- variable renamed to avoid perl complain. Hope I didn't break anything · d13f9c73
  Eduardo Eyras authored Nov 13, 2002
  
  d13f9c73
08 Nov, 2002 1 commit
- added back fetch_by_mapfrag so mouse works · 4f3123af
  Web Admin authored Nov 08, 2002
  
  4f3123af
06 Nov, 2002 1 commit
- some clarification about fetch_by_chr_name · a7c86c29
  Eduardo Eyras authored Nov 06, 2002
  
  a7c86c29
30 Oct, 2002 1 commit
- slices from chromosomes, chromosome adaptor caches on name, tests in a second · 75130c9f
  Arne Stabenau authored Oct 30, 2002
  
  75130c9f
17 Oct, 2002 1 commit
- Add missing fetch_all_by_RawContig_and_score to BaseFeatureAdaptor · 9440d0ed
  Graham McVicker authored Oct 17, 2002
```
Updates so slices can handle negative strand, not finished yet, and not tested
```
  9440d0ed
16 Oct, 2002 1 commit
- lists -> listrefs · cb9c682b
  Graham McVicker authored Oct 16, 2002
  
  cb9c682b
24 Sep, 2002 1 commit
- Container now updates its symbol table on the fly when AUTOLOAD is called (as... · b5826b66
  Graham McVicker authored Sep 24, 2002
```
Container now updates its symbol table on the fly when AUTOLOAD is called (as suggested by Jim Stalker)
```
  b5826b66