Commits · 7ea9ab0f8cdc4a9e6e818e7017439b0f0e02fce0 · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated May 27, 2022.

01 Apr, 2009 1 commit
- from vega-49-dev · 7ea9ab0f
  Web Admin authored Apr 01, 2009
  
  7ea9ab0f
05 Apr, 2007 1 commit
- patched blast · 72b0f9aa
  Web Admin authored Apr 05, 2007
  
  72b0f9aa
16 Dec, 2006 1 commit
- minor optimisation · be858c1a
  Web Admin authored Dec 16, 2006
  
  be858c1a
04 Feb, 2005 1 commit
- removing shouts · 25e625fe
  Web Admin authored Feb 04, 2005
  
  25e625fe
28 Jan, 2005 1 commit
- fixes to blast adaptor · d46c3e96
  James Smith authored Jan 28, 2005
  
  d46c3e96
01 Nov, 2004 1 commit
- tidied up logic · 53b7c508
  Web Admin authored Nov 01, 2004
  
  53b7c508
24 Aug, 2004 1 commit
- dbc should be used not db now · 7b1f078d
  Ian Longden authored Aug 24, 2004
  
  7b1f078d
04 Aug, 2004 1 commit
- add species to stop crashes · a7e72167
  Ian Longden authored Aug 04, 2004
  
  a7e72167
29 Jul, 2004 1 commit
- Registry modifications · ff0713ae
  Ian Longden authored Jul 29, 2004
  
  ff0713ae
21 Jun, 2004 1 commit
- Replaced deprecated ens_genomic_align calls, and also changed genomic_hit... · 9e66579d
  Will Spooner authored Jun 21, 2004
```
Replaced deprecated ens_genomic_align calls, and also changed genomic_hit seqname to seq_region_name as more reliable
```
  9e66579d
18 Jun, 2004 1 commit
- removed deprecated hsp contig_hit call · c84cf0af
  Will Spooner authored Jun 18, 2004
  
  c84cf0af
09 Jun, 2004 1 commit
- Sets HSP chr fileds to NULL when searches are removed to avoid contamination... · 154de031
  Will Spooner authored Jun 09, 2004
```
Sets HSP chr fileds to NULL when searches are removed to avoid contamination with subsequent searches (e.g. in contigview)
```
  154de031
02 May, 2004 1 commit
- HSP genomic hit now Ensembl not bioperl feature · ec35b820
  Will Spooner authored May 02, 2004
  
  ec35b820
31 Mar, 2004 1 commit
- Fixed typo - s/serialised/serialise/ · 8abad378
  Will Spooner authored Mar 31, 2004
  
  8abad378
23 Mar, 2004 1 commit
- Reset HSP token on recovery · a68304ca
  Will Spooner authored Mar 23, 2004
  
  a68304ca
16 Feb, 2004 1 commit
- Ported changes from branch-ensembl-19 · 1c5fe21c
  Will Spooner authored Feb 16, 2004
  
  1c5fe21c
12 Jan, 2004 1 commit
- reverted to version 1.23, which was accidentally clobbered during merge · 488e35d5
  Graham McVicker authored Jan 12, 2004
  
  488e35d5
09 Jan, 2004 1 commit
- Merged in the new-seqstore into HEAD version · fc6ced68
  Arne Stabenau authored Jan 09, 2004
  
  fc6ced68
19 Dec, 2003 1 commit
- Added unified store/retrieve etc modules · d3b8cead
  Will Spooner authored Dec 19, 2003
  
  d3b8cead
26 Nov, 2003 1 commit
- Activated table dropping in clean_blast_database · 2e324587
  Web Admin authored Nov 26, 2003
  
  2e324587
21 Nov, 2003 1 commit
- Added status col to blast_ticket · 1393012b
  Will Spooner authored Nov 21, 2003
  
  1393012b
03 Nov, 2003 1 commit
- remove warn · b5094f90
  Web Admin authored Nov 03, 2003
  
  b5094f90
13 Oct, 2003 1 commit
- Removed uninitialized warns · 5e2a657f
  Will Spooner authored Oct 13, 2003
  
  5e2a657f
16 Sep, 2003 1 commit
- Delegated serialiseation to Storable.pm · 01c2aabd
  Will Spooner authored Sep 16, 2003
  
  01c2aabd
21 Aug, 2003 2 commits
- More output for create_tables and rotate_daily_tables. Better sth cleanup.... · 3539d040
  Will Spooner authored Aug 21, 2003
```
More output for create_tables and rotate_daily_tables. Better sth cleanup. Nasty split-ticket hack ported from branch
```
  3539d040
- Removed drop/delete from tables for now · eb0c7be5
  Will Spooner authored Aug 21, 2003
  
  eb0c7be5
20 Aug, 2003 2 commits
- Added daily result table in the same fassion as hit and hsp · 711a95b4
  Will Spooner authored Aug 20, 2003
  
  711a95b4
- Improved blast cleanup routines · 7244c0cb
  Will Spooner authored Aug 20, 2003
  
  7244c0cb
18 Aug, 2003 4 commits
- Added use_date methods to EnsemblResult type objects. These set the DB tables... · 79a40193
  Will Spooner authored Aug 18, 2003
```
Added use_date methods to EnsemblResult type objects. These set the DB tables to write the HSPs and Hits to. Modified BlastAdaptor accordingly
```
  79a40193
- Fixed SQL error in HSP update · c71e359f
  Will Spooner authored Aug 18, 2003
  
  c71e359f
- Fixed SQL errors in update statements, and fixed UPDATE/STORE issues in object storage methods · 68007cc7
  Will Spooner authored Aug 18, 2003
  
  68007cc7
- Implemented daily table rotation for hit and hsp tables · 2be0b625
  Will Spooner authored Aug 18, 2003
  
  2be0b625
15 Aug, 2003 1 commit

Abstracted store/retrieve SQL out of EnsemblSearchMulti, EnsemblResult,... · dc48b05d

Will Spooner authored Aug 15, 2003

Abstracted store/retrieve SQL out of EnsemblSearchMulti, EnsemblResult, EnsemblHit and EnsemblHSP, and into appropriate new methods in BlastAdaptor

dc48b05d

01 Aug, 2003 1 commit
- Added clean_blast_database method · 1166cfd6
  Web Admin authored Aug 01, 2003
  
  1166cfd6
29 Jul, 2003 1 commit
- Ported fixes from blanch-ensembl-15-1 · 7cf23c3b
  Web Admin authored Jul 29, 2003
  
  7cf23c3b
11 Jul, 2003 1 commit
- Removed reciprocal use Bio::Search::HSP::EnsemblHSP · 2223598e
  Web Admin authored Jul 11, 2003
  
  2223598e
01 Jul, 2003 1 commit
- blast fixes and moveing new_fast from ???DnaA... to BaseAlignFeature · cf89bb7b
  Web Admin authored Jul 01, 2003
  
  cf89bb7b
25 Apr, 2003 1 commit
- Loaded the EnsemblHSP module · 360d2b62
  Will Spooner authored Apr 25, 2003
  
  360d2b62
24 Apr, 2003 2 commits
- Fixed num bound params · 4037f33a
  Will Spooner authored Apr 24, 2003
  
  4037f33a
- Now ISA BaseAdaptor · 40f488d5
  Will Spooner authored Apr 24, 2003
  
  40f488d5