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    • Andreas Kusalananda Kähäri's avatar
      Change in OntologyTermAdaptor method names: · 4a308a01
      Andreas Kusalananda Kähäri authored
        fetch_all_by_child_term() --> fetch_all_by_descendant_term()
        fetch_by_child_term()     --> fetch_all_by_child_term()
      
        fetch_all_by_parent_term()    --> fetch_all_by_ancestor_term()
        fetch_by_parent_term()        --> fetch_all_by_parent_term()
      
      
      Also, make accessors read-only.
      4a308a01
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    • Andreas Kusalananda Kähäri's avatar
      An ontology term object, (most often) created by · ac598480
      Andreas Kusalananda Kähäri authored
      Bio::EnsEMBL::DBSQL::OntologyTermAdaptor.
      
      Currently knows how to get its own children/parent terms, and how to get
      its own ancestors/descendants terms (all parents, all children).
      
      Will be used in queries for genes, transcripts, and translations using
      appropriate adaptors.
      ac598480