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  1. 13 Aug, 2010 1 commit
  2. 29 Jul, 2010 1 commit
  3. 16 Jul, 2010 1 commit
    • Andreas Kusalananda Kähäri's avatar
      Hack: · 888f38d8
      Andreas Kusalananda Kähäri authored
      -  @seqeds = sort { $b->start() <=> $a->start() } @seqeds;
      +  # HACK:   The translation ENSP00000420939 somehow makes the next line
      +  #         bomb out ($a or $b becomes undef) if the start() method
      +  #         is used.  I haven't been able to find out why.  It has 10
      +  #         Selenocysteine seqedits that looks correct.
      +  #         /Andreas (release 59)
      +  my @seqeds = sort { $b->{'start'} <=> $a->{'start'} } @seqeds;
      888f38d8
  4. 12 Jul, 2010 1 commit
  5. 06 Jul, 2010 2 commits
  6. 02 Jul, 2010 3 commits
  7. 01 Jul, 2010 2 commits
  8. 18 Jun, 2010 1 commit
  9. 02 Feb, 2010 1 commit
  10. 01 Sep, 2009 1 commit
  11. 04 Mar, 2009 1 commit
  12. 29 Oct, 2008 1 commit
  13. 28 Jan, 2008 1 commit
  14. 20 Nov, 2007 2 commits
  15. 12 Nov, 2007 1 commit
  16. 16 Apr, 2007 1 commit
  17. 13 Apr, 2007 1 commit
  18. 12 Apr, 2007 1 commit
  19. 04 Apr, 2007 1 commit
  20. 03 Apr, 2007 1 commit
    • Andreas Kusalananda Kähäri's avatar
      Added new methods: · 89fbc961
      Andreas Kusalananda Kähäri authored
          $translation->cdna_start();    # or...
          $translation->cdna_start($transcript);
              # Returns the start position of the translation in cDNA
              # coordinates.  Providing the transcript explicitly speeds
              # things up a bit.  The transcript is used in a call to
              # $exon->cdna_coding_start($transcript);
      
          $translation->cdna_end();    # or...
          $translation->cdna_end($transcript);
              # Returns the end position of the translation in cDNA
              # coordinates.  Providing the transcript explicitly speeds
              # things up a bit.  The transcript is used in a call to
              # $exon->cdna_coding_end($transcript);
      
      
          $translation->genomic_start();
              # Returns the start position of the translation in genomic
              # coordinates on the forward strand.
      
          $translation->genomic_end();
              # Returns the end position of the translation in genomic
              # coordinates on the forward strand.
      89fbc961
  21. 12 Feb, 2007 1 commit
  22. 26 Jan, 2007 1 commit
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  24. 03 Jan, 2007 1 commit
  25. 13 Oct, 2006 1 commit
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  27. 17 Mar, 2006 1 commit
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  29. 20 Oct, 2005 1 commit
  30. 17 Aug, 2005 1 commit
  31. 12 Aug, 2005 1 commit
  32. 12 Apr, 2005 2 commits
  33. 24 Mar, 2005 1 commit