This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated .
  1. 24 Jan, 2014 1 commit
  2. 25 Nov, 2013 1 commit
  3. 12 Aug, 2013 1 commit
  4. 30 Jul, 2013 1 commit
  5. 25 Mar, 2013 1 commit
  6. 16 May, 2012 1 commit
  7. 06 May, 2012 1 commit
  8. 10 Jan, 2012 1 commit
  9. 09 Jun, 2011 1 commit
  10. 05 Jan, 2011 1 commit
  11. 16 Aug, 2010 1 commit
  12. 02 Feb, 2010 1 commit
  13. 04 Mar, 2009 1 commit
  14. 10 Jul, 2008 1 commit
  15. 14 Mar, 2008 1 commit
  16. 02 Jan, 2007 1 commit
  17. 14 Aug, 2006 1 commit
  18. 23 Nov, 2005 1 commit
  19. 12 Aug, 2005 1 commit
  20. 16 May, 2005 1 commit
  21. 09 Jan, 2004 1 commit
  22. 09 Sep, 2003 1 commit
  23. 17 Jul, 2003 1 commit
  24. 28 Jan, 2003 1 commit
  25. 16 Oct, 2002 1 commit
  26. 19 Sep, 2002 1 commit
    • Graham McVicker's avatar
      Improved speed of feature retrieval by: · 1b0e7c46
      Graham McVicker authored
      -'Flatening' FeaturePair object so that it no longer contains 2 SeqFeatures; It is now isa SeqFeature with some additional Hit attributes (object still bhaves as if it contained two features
      -Adding 'fast' constructors to DnaDnaAlignFeatures and PepDnaAlignFeatures
      -Some other minor tweaks such as using bind columns instead of fetchrow_hashref
      1b0e7c46
  27. 11 Sep, 2002 2 commits
  28. 09 Sep, 2002 1 commit
  29. 21 Aug, 2002 1 commit
  30. 19 Aug, 2002 1 commit
  31. 02 Aug, 2002 2 commits
  32. 22 Jul, 2002 2 commits
  33. 01 May, 2002 1 commit
    • Laura Clarke's avatar
      AnalysisAdaptor - logic_name must be unique so fetch_by_logic_name now only... · 4fbe162b
      Laura Clarke authored
      AnalysisAdaptor - logic_name must be unique so fetch_by_logic_name now only returns one analysis object
      DnaAlignFeatureAdaptor - formatting print statements etc
      ProteinAlignFeatureAdaptor - Now follows the same format as DnaAlignFeatureAdaptor, has methods to fetch by contig, slice and assembly location and when constrainted by score
      or percent id all methods can take an optional type which is logic name
      RepeatFeatureAdaptor
      PredictionTranscriptAdaptor all have methods which fetch by slice, contig_id and assembly location and each method has optional type which should be logic_name
      SimpleFeatureAdaptor
      4fbe162b
  34. 11 Apr, 2002 1 commit
  35. 10 Apr, 2002 1 commit
    • Laura Clarke's avatar
      DBAdaptor Fixed sql for new schema, write clone, contig, and chromosome methods tested · da706792
      Laura Clarke authored
      DBEntryAdaptor Fixed SQL as yet untested
      ExonAdaptor Changes to sql to work with the new schema not tested
      GeneAdaptor Changes to sql to work with new schemea not tested
      RawContigAdaptor changes to work with new schema not tested
      RepeatFeatureAdaptor added Fetch by logic name method as now there are two analysis types that can be stored there TRF and RepeatMasker
      SimpleFeatureAdaptor added fetch_by_logic_name methods teh fetch_by logic_name and assembly_location doesn't yet work
      da706792
  36. 13 Mar, 2002 1 commit
  37. 02 Jan, 2002 1 commit